Os07g0582800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0582800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.5 | 0.272 | 12.5 | 0.192 | 0.745 | 0.594 | 0.149 | 0.034 | 0.121 | 2.29 | 20.9 | 1660 | -- | -- |
| 33.47 | 0.269 | 12.5 | 0.184 | 0.744 | 0.592 | 0.152 | -- | 0.116 | 2.3 | 21 | 1675 | -- | -- |
| 33.55 | 0.27 | 12.5 | 0.184 | 0.746 | 0.585 | -- | 0.0205 | 0.118 | 2.29 | 21.04 | 1677 | -- | -- |
| 33.55 | 0.27 | 12.5 | 0.18 | 0.746 | 0.583 | -- | -- | 0.117 | 2.29 | 21.06 | 1675 | -- | -- |
| 63.08 | 0.37 | 12.5 | 0.215 | -- | 0.608 | -- | -0.0181 | 0.124 | -- | 21.3 | 1090 | -- | -- |
| 42.06 | 0.304 | 12.4 | 0.441 | 0.744 | -- | 0.122 | -- | 0.27 | 2.27 | -- | -- | -- | -- |
| 42.11 | 0.304 | 12.4 | 0.437 | 0.744 | -- | -- | -- | 0.269 | 2.27 | -- | -- | -- | -- |
| 63.05 | 0.37 | 12.5 | 0.225 | -- | 0.612 | -- | -- | 0.116 | -- | 21.3 | 1090 | -- | -- |
| 34.18 | 0.272 | 12.5 | -- | 0.744 | 0.646 | -- | -- | 0.0802 | 2.38 | 21.02 | 1871 | -- | -- |
| 75.05 | 0.405 | 12.4 | 0.469 | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
| 47.16 | 0.321 | 12.5 | -- | 0.753 | -- | -- | -- | 0.22 | 2.28 | -- | -- | -- | -- |
| 63.87 | 0.372 | 12.5 | -- | -- | 0.781 | -- | -- | 0.0753 | -- | 20.2 | 2459 | -- | -- |
| 80.85 | 0.42 | 12.4 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 3 | 33.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 10 | 33.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 21 | 33.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 22 | 33.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 32 | 33.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 38 | 33.73 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 54 | 33.76 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 70 | 33.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 95 | 33.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 111 | 33.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 300 | 34.05 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 301 | 34.05 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 345 | 34.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 355 | 34.10 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 361 | 34.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 440 | 34.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 464 | 34.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 476 | 34.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 528 | 34.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 532 | 34.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 548 | 34.22 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 623 | 34.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 641 | 34.27 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 651 | 34.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 652 | 34.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 696 | 34.29 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 752 | 34.31 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 777 | 34.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 783 | 34.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 786 | 34.33 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 801 | 34.34 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 825 | 34.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 857 | 34.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 883 | 34.36 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 885 | 34.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 931 | 34.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 933 | 34.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 955 | 34.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |