FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0582500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sorbitol transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0343) R2 : 0.659
β1 : 3.21 (0.129) R2dD : 0.695 R2D : 0.332
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.26 (0.119) R2dE : 0.435 R2E : -0.105
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.888 (0.0882) R2dN8 : 0.174 R2N8 : -0.225
σ : 0.597
deviance : 164.44
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.694
memory length : 21484
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.24 0.591 3.23 2.11 0.176 -2.77 0.364 -4.65 0.383 16.8 1.226 11516 -- --
184.23 0.632 3.24 2.55 0.831 -2.65 0.473 -- 0.588 16.7 2.05 14999 -- --
158.47 0.586 3.23 2.12 0.179 -2.78 -- -4.63 0.385 16.8 1.22 11518 -- --
170.91 0.609 3.15 3.14 0.681 -2.37 -- -- 0.641 16.8 2.04 14928 -- --
160.08 0.589 3.23 2.1 -- -2.78 -- -4.69 0.375 -- 1.216 11506 -- --
299.72 0.812 3.25 2.55 0.259 -- 0.574 -- -0.00242 15.9 -- -- -- --
300.66 0.812 3.25 2.55 0.264 -- -- -- 0.000846 16.2 -- -- -- --
164.44 0.597 3.14 3.21 -- -2.26 -- -- 0.888 -- 1.694 21484 -- --
350.37 0.872 3.21 -- 0.213 -2.32 -- -- 0.206 16.8 7.98 10124 -- --
304.44 0.815 3.25 2.54 -- -- -- -- -0.00618 -- -- -- -- --
472.69 1.02 3.31 -- 0.215 -- -- -- -0.284 16.4 -- -- -- --
351.82 0.874 3.19 -- -- -2.27 -- -- 0.231 -- 7.96 10075 -- --
475.18 1.02 3.31 -- -- -- -- -- -0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.00 humidity 70.0 43200 < th dose independent rect. 17 1
2 143.37 humidity 70.0 43200 > th dose independent rect. 17 1
4 144.63 precipitation 0.1 43200 < th dose independent rect. 16 1
5 144.63 precipitation 0.1 43200 < th dose dependent rect. 16 1
6 144.64 precipitation 0.1 43200 > th dose independent rect. 16 1
7 144.69 precipitation 0.1 43200 > th dose dependent rect. 16 1
8 144.71 humidity 90.0 43200 < th dose dependent rect. 17 1
9 144.86 precipitation 0.1 43200 > th dose dependent rect. 13 4
10 144.88 precipitation 0.1 43200 > th dose independent rect. 13 7
11 144.91 precipitation 0.1 43200 < th dose independent rect. 13 7
12 144.91 precipitation 0.1 43200 < th dose dependent rect. 13 7
14 145.25 radiation 10.0 14400 > th dose dependent rect. 17 15
17 145.29 radiation 10.0 14400 > th dose dependent rect. 5 3
31 145.45 humidity 70.0 43200 > th dose dependent rect. 17 1
33 145.58 humidity 50.0 43200 > th dose dependent rect. 17 1
34 145.73 precipitation 0.1 43200 > th dose independent rect. 15 5
35 145.75 precipitation 0.1 43200 < th dose independent rect. 15 5
36 145.75 humidity 80.0 43200 > th dose independent rect. 13 8
37 145.75 precipitation 0.1 43200 < th dose dependent rect. 15 5
42 145.94 humidity 70.0 43200 > th dose dependent rect. 16 3
53 146.29 precipitation 0.1 43200 < th dose independent rect. 13 4
54 146.29 humidity 80.0 43200 < th dose independent rect. 13 7
56 146.29 precipitation 0.1 43200 < th dose dependent rect. 13 4
57 146.30 precipitation 0.1 43200 > th dose independent rect. 13 4
61 146.39 radiation 10.0 14400 < th dose independent rect. 22 10
62 146.39 radiation 10.0 14400 < th dose independent rect. 18 14
63 146.40 radiation 10.0 14400 < th dose independent rect. 5 3
64 146.40 radiation 10.0 14400 < th dose independent rect. 24 8
90 146.53 humidity 80.0 43200 > th dose independent rect. 10 11
93 146.58 humidity 80.0 43200 > th dose independent rect. 14 4
94 146.58 precipitation 0.1 43200 > th dose dependent rect. 17 3
97 146.66 radiation 20.0 14400 < th dose independent rect. 16 17
104 146.77 precipitation 0.1 43200 > th dose dependent rect. 13 7
107 146.80 humidity 60.0 43200 > th dose independent rect. 14 1
117 146.92 humidity 80.0 43200 < th dose independent rect. 10 11
120 146.99 radiation 30.0 14400 < th dose dependent rect. 18 13
145 147.14 radiation 30.0 14400 < th dose dependent rect. 5 2
147 147.14 radiation 30.0 14400 < th dose dependent rect. 22 9
152 147.16 radiation 30.0 14400 < th dose dependent rect. 24 7
174 147.29 precipitation 0.1 43200 > th dose dependent rect. 13 15
234 147.59 radiation 10.0 14400 < th dose independent rect. 13 19
240 147.66 radiation 10.0 14400 < th dose independent rect. 11 21
241 147.70 radiation 10.0 14400 < th dose independent sin 11 NA
294 148.12 humidity 60.0 43200 > th dose independent rect. 13 4
328 148.28 humidity 80.0 43200 < th dose independent rect. 14 4
392 148.55 humidity 90.0 43200 > th dose independent rect. 20 1
400 148.64 humidity 80.0 43200 > th dose dependent rect. 8 14
432 148.78 humidity 90.0 43200 < th dose independent rect. 20 1
466 148.95 precipitation 0.1 43200 < th dose independent rect. 13 11
469 148.95 precipitation 0.1 43200 < th dose dependent rect. 13 11
474 149.01 precipitation 0.1 43200 > th dose independent rect. 13 11
515 149.33 precipitation 0.1 43200 > th dose independent rect. 13 14
516 149.34 precipitation 0.1 43200 < th dose independent rect. 13 14
518 149.34 precipitation 0.1 43200 < th dose dependent rect. 13 14
528 149.42 humidity 80.0 43200 > th dose dependent rect. 8 2
548 149.49 radiation 10.0 14400 < th dose independent rect. 16 22
556 149.57 precipitation 0.1 43200 > th dose independent rect. 15 12
558 149.58 precipitation 0.1 43200 < th dose independent rect. 15 12
560 149.58 precipitation 0.1 43200 < th dose dependent rect. 15 12
568 149.65 radiation 20.0 14400 > th dose independent rect. 6 2
587 149.69 precipitation 0.1 43200 < th dose independent sin 17 NA
592 149.69 precipitation 0.1 43200 < th dose dependent sin 17 NA
595 149.70 precipitation 0.1 43200 > th dose independent sin 17 NA
626 149.92 precipitation 0.1 43200 < th dose independent rect. 15 9
629 149.92 precipitation 0.1 43200 < th dose dependent rect. 15 9
651 149.99 precipitation 0.1 43200 > th dose dependent sin 15 NA
741 150.31 humidity 90.0 14400 > th dose independent rect. 1 1
782 150.48 radiation 10.0 14400 < th dose independent rect. 24 19
791 150.49 radiation 10.0 14400 < th dose independent no NA NA
794 150.49 radiation 10.0 14400 < th dose independent rect. 4 15
807 150.49 radiation 10.0 14400 < th dose independent rect. 4 21
887 150.62 humidity 90.0 43200 > th dose independent rect. 6 4
961 151.04 humidity 80.0 43200 > th dose independent sin 21 NA
989 151.13 humidity 90.0 43200 < th dose independent rect. 6 4