Os07g0581400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0581400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.51 | 0.645 | 5.83 | -1.02 | 1.21 | -2.19 | 0.912 | -0.3 | -0.712 | 17.7 | 31.64 | 233 | -- | -- |
| 188.58 | 0.64 | 5.84 | -1.07 | 1.21 | -2.2 | 1 | -- | -0.723 | 17.7 | 31.7 | 231 | -- | -- |
| 190.17 | 0.642 | 5.82 | -0.938 | 1.21 | -2.23 | -- | -0.879 | -0.685 | 17.7 | 31.8 | 222 | -- | -- |
| 190.87 | 0.643 | 5.84 | -1.07 | 1.21 | -2.24 | -- | -- | -0.713 | 17.7 | 32.1 | 226 | -- | -- |
| 245.27 | 0.729 | 5.83 | -1.16 | -- | -3.53 | -- | -1.11 | -0.831 | -- | 36.68 | 264 | -- | -- |
| 246.71 | 0.736 | 5.76 | -0.554 | 1.86 | -- | 1.4 | -- | -0.351 | 17.2 | -- | -- | -- | -- |
| 251.61 | 0.743 | 5.76 | -0.554 | 1.87 | -- | -- | -- | -0.344 | 17.2 | -- | -- | -- | -- |
| 245.45 | 0.73 | 5.85 | -1.31 | -- | -3.49 | -- | -- | -0.893 | -- | 33.3 | 267 | -- | -- |
| 218.54 | 0.689 | 5.79 | -- | 1.38 | -1.91 | -- | -- | -0.504 | 17.6 | 37.98 | 187 | -- | -- |
| 434.29 | 0.974 | 5.74 | -0.62 | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
| 259.69 | 0.754 | 5.75 | -- | 1.88 | -- | -- | -- | -0.283 | 17.2 | -- | -- | -- | -- |
| 290.26 | 0.793 | 5.8 | -- | -- | -3.1 | -- | -- | -0.67 | -- | 73.27 | 264 | -- | -- |
| 444.42 | 0.984 | 5.72 | -- | -- | -- | -- | -- | -0.323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 3 | 183.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 6 | 184.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 19 | 186.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 34 | 188.31 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 47 | 189.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 58 | 190.10 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 71 | 190.42 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 75 | 190.54 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 99 | 191.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 108 | 191.87 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 110 | 191.93 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 130 | 192.35 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 148 | 192.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 156 | 192.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 196 | 193.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 208 | 193.69 | humidity | 70 | 14400 | > th | dose dependent | sin | 13 | NA |
| 290 | 194.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 319 | 194.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 414 | 195.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 417 | 195.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 418 | 195.51 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 419 | 195.51 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 454 | 195.79 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 469 | 195.89 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 471 | 195.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 502 | 196.02 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 507 | 196.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 18 |
| 508 | 196.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 8 |
| 519 | 196.10 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 520 | 196.10 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 548 | 196.18 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 592 | 196.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 18 |
| 619 | 196.36 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 642 | 196.42 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 646 | 196.42 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 12 |
| 687 | 196.50 | temperature | 30 | 4320 | < th | dose dependent | sin | 20 | NA |
| 737 | 196.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 751 | 196.62 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 782 | 196.68 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 814 | 196.74 | temperature | 10 | 4320 | > th | dose dependent | sin | 22 | NA |
| 848 | 196.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 11 |
| 878 | 196.83 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 8 |
| 884 | 196.85 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 935 | 196.93 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 2 |