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Os07g0581000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF250 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0165) R2 : 0.359
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.547 (0.0422) R2dC : 0.237 R2C : 0.213
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.312 (0.0348) R2dN8 : 0.146 R2N8 : 0.122
σ : 0.311
deviance : 44.34
__
_____
C
peak time of C : 3.98
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.6 0.28 11.6 -0.552 0.552 0.502 -0.136 -0.873 0.155 4.01 19.3 1631 -- --
36.56 0.282 11.6 -0.454 0.543 0.674 -0.0297 -- 0.172 3.94 19.1 1986 -- --
35.6 0.278 11.6 -0.538 0.554 0.51 -- -0.894 0.162 3.91 19.18 1624 -- --
36.52 0.281 11.6 -0.48 0.55 0.658 -- -- 0.166 4.09 19 2014 -- --
51.27 0.333 11.6 -0.556 -- 0.514 -- -0.618 0.184 -- 19.2 2589 -- --
43.26 0.308 11.5 -0.198 0.553 -- -0.163 -- 0.289 4.08 -- -- -- --
43.32 0.308 11.5 -0.196 0.551 -- -- -- 0.29 3.97 -- -- -- --
51.94 0.336 11.5 -0.448 -- 0.588 -- -- 0.207 -- 19.2 2471 -- --
40.62 0.298 11.5 -- 0.593 0.343 -- -- 0.274 3.66 19 2014 -- --
59.9 0.362 11.5 -0.174 -- -- -- -- 0.305 -- -- -- -- --
44.34 0.311 11.5 -- 0.547 -- -- -- 0.312 3.98 -- -- -- --
56.69 0.351 11.5 -- -- 0.409 -- -- 0.258 -- 19.29 2341 -- --
60.7 0.364 11.5 -- -- -- -- -- 0.324 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.63 temperature 20.0 270 > th dose independent rect. 13 19
6 30.27 temperature 20.0 270 > th dose independent rect. 24 8
33 32.18 temperature 15.0 270 > th dose dependent rect. 1 7
41 32.54 temperature 10.0 43200 > th dose independent rect. 10 5
47 32.67 temperature 20.0 720 > th dose independent rect. 19 7
54 32.83 temperature 20.0 720 > th dose independent rect. 19 9
71 33.03 temperature 20.0 720 > th dose independent sin 14 NA
113 33.42 humidity 80.0 270 > th dose independent rect. 1 7
114 33.43 humidity 60.0 270 > th dose dependent rect. 1 7
128 33.51 temperature 20.0 720 > th dose independent rect. 10 16
144 33.59 temperature 20.0 270 > th dose independent rect. 1 20
151 33.63 temperature 20.0 270 > th dose independent rect. 12 9
207 33.90 temperature 10.0 720 > th dose dependent rect. 18 15
210 33.91 precipitation 0.1 270 < th dose independent rect. 8 17
211 33.91 precipitation 0.1 270 < th dose dependent rect. 8 17
220 33.96 temperature 10.0 270 > th dose dependent rect. 14 17
229 34.01 radiation 30.0 270 < th dose independent rect. 1 7
241 34.08 humidity 90.0 270 < th dose independent rect. 22 15
252 34.12 wind 7.0 270 < th dose independent rect. 21 15
280 34.23 wind 9.0 270 < th dose independent rect. 8 17
288 34.25 temperature 10.0 270 > th dose independent rect. 1 7
290 34.25 temperature 30.0 270 < th dose independent rect. 1 7
291 34.25 humidity 50.0 270 > th dose independent rect. 1 7
293 34.25 atmosphere 995.0 270 > th dose independent rect. 1 7
294 34.25 atmosphere 1015.0 270 < th dose independent rect. 1 7
297 34.25 temperature 10.0 270 > th dose independent rect. 8 17
298 34.26 wind 9.0 270 < th dose independent rect. 1 7
325 34.35 temperature 10.0 720 > th dose dependent sin 11 NA
340 34.40 precipitation 0.1 270 < th dose independent rect. 1 7
342 34.40 radiation 40.0 270 < th dose dependent rect. 1 7
343 34.40 precipitation 0.1 270 < th dose dependent rect. 1 7
390 34.50 precipitation 0.1 270 < th dose independent rect. 21 15
393 34.50 precipitation 0.1 270 < th dose dependent rect. 21 15
396 34.51 temperature 15.0 1440 > th dose independent rect. 10 5
429 34.58 radiation 40.0 90 < th dose independent rect. 3 6
435 34.59 temperature 15.0 10 > th dose dependent rect. 3 6
451 34.63 wind 9.0 270 < th dose independent rect. 7 6
452 34.63 temperature 10.0 270 > th dose independent rect. 7 6
453 34.63 atmosphere 995.0 270 > th dose independent rect. 7 6
454 34.63 atmosphere 1015.0 270 < th dose independent rect. 7 6
455 34.63 precipitation 0.1 270 < th dose independent rect. 7 6
459 34.63 precipitation 0.1 270 < th dose dependent rect. 7 6
463 34.64 atmosphere 995.0 270 > th dose independent rect. 8 17
471 34.67 temperature 10.0 270 > th dose independent rect. 21 15
472 34.67 atmosphere 995.0 270 > th dose independent rect. 21 15
484 34.69 humidity 50.0 90 > th dose dependent rect. 3 6
487 34.70 wind 1.0 270 > th dose independent rect. 12 9
499 34.71 temperature 10.0 10 > th dose dependent rect. 14 19
514 34.73 humidity 60.0 90 > th dose independent rect. 3 6
532 34.76 wind 1.0 270 > th dose independent rect. 7 6
565 34.79 wind 9.0 90 < th dose independent rect. 3 6
566 34.79 temperature 10.0 90 > th dose independent rect. 3 6
569 34.79 atmosphere 995.0 90 > th dose independent rect. 3 6
570 34.79 atmosphere 1015.0 90 < th dose independent rect. 3 6
574 34.79 wind 9.0 270 < th dose independent rect. 13 18
592 34.83 radiation 40.0 90 < th dose independent rect. 15 18
617 34.88 wind 9.0 270 < th dose independent rect. 12 9
624 34.89 humidity 50.0 270 > th dose independent rect. 7 6
625 34.89 radiation 1.0 270 > th dose independent rect. 7 6
656 34.92 radiation 1.0 90 > th dose independent rect. 9 6
672 34.94 radiation 1.0 10 > th dose independent rect. 9 5
673 34.94 atmosphere 1015.0 270 < th dose independent rect. 12 9
677 34.95 temperature 20.0 30 > th dose independent sin 7 NA
682 34.96 temperature 30.0 90 < th dose independent rect. 3 6
683 34.96 atmosphere 995.0 90 > th dose independent rect. 9 6
684 34.96 precipitation 0.1 90 < th dose independent rect. 3 6
691 34.96 radiation 40.0 270 < th dose independent rect. 13 18
693 34.96 precipitation 0.1 90 < th dose dependent rect. 3 6
708 34.98 wind 1.0 270 > th dose independent rect. 8 17
719 35.00 precipitation 0.1 90 < th dose independent rect. 9 6
720 35.00 atmosphere 995.0 10 > th dose independent rect. 9 7
728 35.00 precipitation 0.1 90 < th dose dependent rect. 9 6
732 35.00 temperature 10.0 10 > th dose dependent rect. 16 17
747 35.01 wind 9.0 270 < th dose dependent rect. 7 7
764 35.04 humidity 50.0 270 > th dose independent rect. 21 15
783 35.06 radiation 40.0 10 < th dose independent rect. 14 19
832 35.12 temperature 10.0 1440 > th dose independent rect. 15 19
850 35.15 wind 9.0 10 < th dose independent rect. 9 5
868 35.18 humidity 90.0 270 < th dose independent sin 6 NA
869 35.18 wind 1.0 90 > th dose independent rect. 9 6
872 35.18 radiation 40.0 90 < th dose independent rect. 3 8
873 35.18 radiation 40.0 10 < th dose independent rect. 16 17
877 35.19 atmosphere 995.0 270 > th dose independent rect. 13 18
901 35.22 temperature 10.0 10 > th dose independent rect. 9 7
904 35.22 atmosphere 1015.0 10 < th dose independent rect. 9 7
905 35.22 precipitation 0.1 10 < th dose independent rect. 9 7
912 35.22 precipitation 0.1 10 < th dose dependent rect. 9 7
913 35.22 temperature 15.0 10 > th dose dependent rect. 1 8
922 35.23 wind 9.0 10 < th dose independent rect. 9 7
935 35.24 wind 1.0 10 > th dose independent rect. 9 5
953 35.26 humidity 50.0 14400 > th dose independent rect. 18 15