Os07g0580800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0580800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.43 | 0.389 | 8.35 | -0.36 | 0.471 | 0.107 | -0.35 | -6.61 | 0.0556 | 8.15 | 31.1 | 685 | -- | -- |
| 70.21 | 0.39 | 8.28 | 0.219 | 0.508 | -0.563 | -0.451 | -- | 0.0663 | 7.57 | 31.1 | 687 | -- | -- |
| 68.78 | 0.386 | 8.35 | -0.359 | 0.477 | 0.111 | -- | -6.42 | 0.0579 | 8.17 | 31.08 | 687 | -- | -- |
| 70.11 | 0.39 | 8.29 | 0.214 | 0.477 | -0.593 | -- | -- | 0.0515 | 8.14 | 31.07 | 687 | -- | -- |
| 79.56 | 0.415 | 8.36 | -0.277 | -- | -0.162 | -- | -6.18 | 0.046 | -- | 31 | 671 | -- | -- |
| 77.96 | 0.414 | 8.27 | 0.134 | 0.633 | -- | -0.000444 | -- | 0.115 | 7.87 | -- | -- | -- | -- |
| 77.96 | 0.413 | 8.27 | 0.134 | 0.633 | -- | -- | -- | 0.115 | 7.87 | -- | -- | -- | -- |
| 80.83 | 0.419 | 8.3 | 0.255 | -- | -0.848 | -- | -- | 0.0389 | -- | 31 | 667 | -- | -- |
| 71.32 | 0.393 | 8.29 | -- | 0.487 | -0.553 | -- | -- | 0.0367 | 8.08 | 31.05 | 686 | -- | -- |
| 99.71 | 0.467 | 8.28 | 0.141 | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
| 78.44 | 0.414 | 8.27 | -- | 0.634 | -- | -- | -- | 0.0999 | 7.86 | -- | -- | -- | -- |
| 82.46 | 0.423 | 8.31 | -- | -- | -0.817 | -- | -- | 0.015 | -- | 31 | 662 | -- | -- |
| 100.23 | 0.467 | 8.29 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.74 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 3 | 66.98 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 19 | 67.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 21 | 67.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 22 | 67.21 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 23 | 67.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 37 | 67.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 38 | 67.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 50 | 67.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 78 | 68.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 86 | 68.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 106 | 68.37 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 22 |
| 118 | 68.48 | temperature | 20 | 270 | > th | dose dependent | sin | 15 | NA |
| 120 | 68.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 129 | 68.51 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 151 | 68.60 | temperature | 20 | 10 | > th | dose dependent | sin | 13 | NA |
| 156 | 68.61 | temperature | 30 | 720 | > th | dose dependent | rect. | 10 | 5 |
| 167 | 68.63 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 185 | 68.64 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 209 | 68.67 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 210 | 68.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 267 | 68.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 272 | 68.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 282 | 68.80 | temperature | 30 | 720 | > th | dose dependent | sin | 5 | NA |
| 290 | 68.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 304 | 68.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 308 | 68.84 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 365 | 68.94 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 371 | 68.94 | temperature | 10 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 374 | 68.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 411 | 68.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 16 |
| 413 | 68.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 446 | 69.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 482 | 69.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 489 | 69.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 500 | 69.11 | temperature | 20 | 720 | > th | dose dependent | sin | 22 | NA |
| 507 | 69.12 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 10 |
| 572 | 69.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 626 | 69.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 629 | 69.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 636 | 69.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 665 | 69.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 704 | 69.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 753 | 69.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 762 | 69.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 770 | 69.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 773 | 69.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 797 | 69.34 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 833 | 69.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 834 | 69.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 16 |
| 835 | 69.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 844 | 69.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 850 | 69.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 865 | 69.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 908 | 69.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 959 | 69.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 981 | 69.47 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 982 | 69.47 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |