Os07g0579100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0579100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.64 | 0.586 | 6.95 | 1.82 | 1.51 | 0.483 | -1.03 | 7.16 | 0.527 | 23.7 | 29.54 | 3319 | -- | -- |
| 153.85 | 0.578 | 6.82 | 3.14 | 1.49 | 1.38 | -1.11 | -- | 0.536 | 23.4 | 30.4 | 1903 | -- | -- |
| 159.71 | 0.589 | 6.95 | 1.8 | 1.53 | 0.504 | -- | 7.33 | 0.523 | 23.7 | 29.5 | 3475 | -- | -- |
| 158.43 | 0.586 | 6.83 | 3.23 | 1.55 | 1.46 | -- | -- | 0.573 | 23.4 | 30.29 | 2111 | -- | -- |
| 272.47 | 0.773 | 6.74 | 3.05 | -- | 1.09 | -- | 0.813 | 0.846 | -- | 29.4 | 3229 | -- | -- |
| 211.63 | 0.682 | 6.78 | 2.86 | 1.43 | -- | -1.24 | -- | 0.783 | 23.5 | -- | -- | -- | -- |
| 218.17 | 0.692 | 6.78 | 2.91 | 1.44 | -- | -- | -- | 0.787 | 23.7 | -- | -- | -- | -- |
| 273.15 | 0.773 | 6.73 | 3.15 | -- | 1.14 | -- | -- | 0.873 | -- | 29.4 | 3229 | -- | -- |
| 421.14 | 0.956 | 6.88 | -- | 1.55 | 0.841 | -- | -- | 0.335 | 23.6 | 31.1 | 2028 | -- | -- |
| 347.89 | 0.872 | 6.75 | 2.95 | -- | -- | -- | -- | 0.804 | -- | -- | -- | -- | -- |
| 441.39 | 0.983 | 6.85 | -- | 1.47 | -- | -- | -- | 0.463 | 23.8 | -- | -- | -- | -- |
| 531.1 | 1.08 | 6.81 | -- | -- | 0.891 | -- | -- | 0.513 | -- | 29.4 | 3229 | -- | -- |
| 577.61 | 1.12 | 6.82 | -- | -- | -- | -- | -- | 0.477 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 152.74 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 3 | 152.85 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 5 | 152.93 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 9 | 153.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 14 | 153.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 18 | 153.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 19 | 153.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 26 | 153.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 27 | 153.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 31 | 153.78 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 34 | 153.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 73 | 154.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 93 | 154.50 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 95 | 154.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 105 | 154.78 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 172 | 155.07 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 292 | 155.82 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 8 |
| 294 | 155.83 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 12 |
| 296 | 155.83 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 297 | 155.84 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 306 | 155.87 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 321 | 156.03 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 17 |
| 363 | 156.15 | radiation | 30 | 4320 | < th | dose independent | sin | 12 | NA |
| 373 | 156.21 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 377 | 156.25 | radiation | 30 | 4320 | > th | dose independent | sin | 11 | NA |
| 396 | 156.36 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 488 | 156.77 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 490 | 156.80 | radiation | 20 | 4320 | > th | dose dependent | sin | 12 | NA |
| 571 | 157.03 | temperature | 30 | 14400 | > th | dose dependent | sin | 10 | NA |
| 713 | 157.58 | radiation | 40 | 4320 | < th | dose dependent | sin | 11 | NA |
| 747 | 157.69 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 7 |
| 758 | 157.73 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 11 |
| 864 | 157.96 | radiation | 40 | 4320 | > th | dose dependent | rect. | 12 | 22 |
| 880 | 157.97 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 896 | 157.98 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 904 | 157.98 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 10 |