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Os07g0578800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.29 (0.0278) R2 : 0.749
β1 : 1.9 (0.101) R2dD : 0.201 R2D : 0.113
β2 : 1.15 (0.1) R2dC : 0.142 R2C : 0.325
β3 : -1.25 (0.0966) R2dE : 0.183 R2E : 0.354
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.766 (0.0595) R2dN8 : 0.124 R2N8 : 0.011
σ : 0.518
deviance : 123.62
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C
peak time of C : 17
E
wheather : precipitation
threshold : 0.4195
memory length : 286
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.86
open length of G : 2.51

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.22 0.517 7.29 1.87 1.19 -1.22 0.617 -0.505 0.753 17 0.206 278 3.02 2.38
121.68 0.514 7.29 1.92 1.19 -1.23 0.744 -- 0.765 17 0.499 279 3 2.43
121.89 0.514 7.29 1.88 1.17 -1.27 -- -0.684 0.753 16.9 0.4998 279 2.99 2.43
123.62 0.518 7.29 1.9 1.15 -1.25 -- -- 0.766 17 0.4195 286 2.86 2.51
151.65 0.574 7.25 1.99 -- -1.8 -- -0.535 0.822 -- 3.673 353 2.5 2.06
162.06 0.597 7.33 1.87 2.09 -- 1.03 -- 0.674 17.5 -- -- -- --
164.69 0.601 7.33 1.87 2.09 -- -- -- 0.679 17.5 -- -- -- --
152.42 0.575 7.26 1.93 -- -1.82 -- -- 0.792 -- 3.988 354 2.43 2.1
219.16 0.689 7.33 -- 1.15 -1.24 -- -- 0.568 16.8 0.5 286 2.97 2.5
392.87 0.926 7.3 1.8 -- -- -- -- 0.627 -- -- -- -- --
256.53 0.749 7.37 -- 2.06 -- -- -- 0.471 17.5 -- -- -- --
232.51 0.71 7.32 -- -- -2.1 -- -- 0.558 -- 0.3965 370 0.2 5.43
478.04 1.02 7.34 -- -- -- -- -- 0.428 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.37 radiation 30.0 90 < th dose independent rect. 3 6
2 122.38 precipitation 0.1 270 < th dose independent rect. 3 2
3 122.38 precipitation 0.1 270 < th dose dependent rect. 3 2
4 122.58 wind 7.0 270 < th dose independent rect. 7 18
5 122.69 wind 9.0 270 < th dose independent rect. 5 22
6 122.98 wind 7.0 270 < th dose independent rect. 6 20
8 123.16 precipitation 0.1 270 < th dose independent rect. 1 6
9 123.16 precipitation 0.1 270 < th dose dependent rect. 1 6
10 123.28 precipitation 0.1 90 < th dose independent rect. 3 5
11 123.28 precipitation 0.1 90 < th dose dependent rect. 3 5
19 123.45 wind 5.0 270 < th dose independent rect. 3 2
20 123.48 humidity 70.0 90 > th dose independent rect. 3 6
21 123.57 radiation 20.0 270 < th dose independent rect. 1 7
25 123.65 wind 5.0 90 < th dose independent rect. 3 5
26 123.65 radiation 30.0 270 < th dose dependent rect. 1 7
32 123.91 wind 5.0 270 < th dose independent rect. 1 6
37 124.12 humidity 70.0 270 > th dose independent rect. 1 6
46 124.33 temperature 10.0 270 > th dose independent rect. 3 2
48 124.33 temperature 30.0 270 < th dose independent rect. 3 2
49 124.33 humidity 50.0 270 > th dose independent rect. 3 2
52 124.33 atmosphere 995.0 270 > th dose independent rect. 3 2
53 124.33 atmosphere 1010.0 270 < th dose independent rect. 3 2
55 124.33 radiation 20.0 270 < th dose independent rect. 3 2
58 124.33 temperature 10.0 270 > th dose independent rect. 5 22
62 124.37 radiation 40.0 270 < th dose dependent rect. 3 2
64 124.39 radiation 1.0 270 < th dose dependent rect. 3 2
67 124.45 temperature 10.0 90 > th dose independent rect. 3 5
69 124.45 temperature 30.0 90 < th dose independent rect. 3 5
70 124.45 humidity 50.0 90 > th dose independent rect. 3 5
72 124.45 atmosphere 995.0 90 > th dose independent rect. 3 5
73 124.45 atmosphere 1015.0 90 < th dose independent rect. 3 5
74 124.45 temperature 10.0 90 > th dose independent rect. 8 19
78 124.49 temperature 10.0 270 > th dose independent rect. 1 6
80 124.49 temperature 30.0 270 < th dose independent rect. 1 6
81 124.49 humidity 50.0 270 > th dose independent rect. 1 6
83 124.49 atmosphere 995.0 270 > th dose independent rect. 1 6
84 124.49 atmosphere 1015.0 270 < th dose independent rect. 1 6
88 124.51 radiation 1.0 270 < th dose independent rect. 3 2
105 124.78 temperature 10.0 270 > th dose independent rect. 6 20
107 124.92 precipitation 0.1 90 < th dose independent rect. 8 19
108 124.92 precipitation 0.1 90 < th dose dependent rect. 8 19
111 124.97 temperature 30.0 270 < th dose dependent rect. 3 2
112 124.97 radiation 40.0 270 < th dose dependent rect. 2 4
128 125.02 radiation 40.0 90 < th dose dependent rect. 3 6
138 125.25 wind 9.0 90 < th dose dependent rect. 3 5
153 125.52 wind 9.0 270 < th dose dependent rect. 7 18
160 125.68 precipitation 0.1 10 < th dose independent rect. 3 6
162 125.68 precipitation 0.1 10 < th dose dependent rect. 3 6
163 125.73 precipitation 0.1 270 < th dose independent rect. 6 20
164 125.73 precipitation 0.1 270 < th dose dependent rect. 6 20
167 125.87 wind 9.0 270 < th dose dependent rect. 3 2
179 126.33 wind 1.0 270 > th dose independent rect. 1 6
207 126.69 atmosphere 995.0 90 > th dose independent rect. 8 19
238 126.85 humidity 50.0 270 > th dose dependent rect. 3 2
245 127.02 wind 9.0 270 < th dose dependent rect. 6 20
252 127.13 wind 9.0 10 < th dose independent rect. 9 18
255 127.14 humidity 50.0 90 > th dose dependent rect. 3 6
260 127.22 radiation 30.0 10 < th dose independent rect. 3 6
271 127.30 atmosphere 995.0 270 > th dose independent rect. 6 20
273 127.33 wind 5.0 10 < th dose independent rect. 3 6
275 127.37 wind 1.0 270 > th dose independent rect. 2 4
279 127.44 precipitation 0.1 270 < th dose independent rect. 14 16
280 127.44 precipitation 0.1 270 < th dose dependent rect. 14 16
283 127.50 wind 7.0 270 < th dose independent rect. 6 7
290 127.56 temperature 30.0 90 < th dose dependent rect. 3 5
300 127.64 wind 9.0 270 < th dose dependent rect. 1 6
302 127.66 precipitation 0.1 10 < th dose independent rect. 9 18
303 127.66 precipitation 0.1 10 < th dose dependent rect. 9 18
307 127.79 radiation 10.0 270 < th dose dependent rect. 2 11
312 127.82 temperature 10.0 10 > th dose independent rect. 3 6
314 127.82 temperature 30.0 10 < th dose independent rect. 3 6
315 127.82 humidity 50.0 10 > th dose independent rect. 3 6
317 127.82 atmosphere 995.0 10 > th dose independent rect. 3 6
318 127.82 atmosphere 1015.0 10 < th dose independent rect. 3 6
319 127.82 precipitation 0.1 270 < th dose independent rect. 6 8
320 127.82 temperature 10.0 10 > th dose independent rect. 9 18
322 127.82 precipitation 0.1 270 < th dose dependent rect. 6 8
324 127.83 temperature 10.0 270 > th dose independent rect. 6 7
325 127.83 atmosphere 995.0 270 > th dose independent rect. 6 7
326 127.83 atmosphere 1015.0 270 < th dose independent rect. 6 7
328 127.83 temperature 10.0 270 > th dose independent rect. 13 17
350 127.94 radiation 40.0 270 < th dose independent rect. 13 17
367 128.04 wind 9.0 10 < th dose dependent rect. 3 6
389 128.20 wind 9.0 270 < th dose dependent rect. 7 6
419 128.53 wind 1.0 270 > th dose independent rect. 3 1
425 128.67 temperature 10.0 270 > th dose dependent rect. 6 6
435 128.82 precipitation 0.1 270 < th dose independent rect. 2 16
437 128.82 precipitation 0.1 270 < th dose dependent rect. 2 16
444 128.90 atmosphere 1015.0 270 < th dose independent rect. 11 10
448 128.93 wind 7.0 270 < th dose independent rect. 18 8
454 128.95 wind 9.0 270 < th dose independent rect. 21 14
471 129.04 humidity 50.0 270 > th dose independent rect. 6 7
473 129.04 humidity 50.0 270 > th dose dependent rect. 1 6
474 129.05 temperature 15.0 270 > th dose independent rect. 11 10
479 129.10 temperature 10.0 270 > th dose independent rect. 21 14
480 129.10 atmosphere 995.0 270 > th dose independent rect. 21 14
484 129.14 wind 9.0 270 < th dose independent rect. 13 17
491 129.18 humidity 70.0 90 > th dose independent rect. 3 8
492 129.18 radiation 40.0 90 < th dose independent rect. 3 18
506 129.30 humidity 50.0 270 > th dose independent rect. 21 14
518 129.39 radiation 1.0 270 < th dose dependent rect. 18 8
523 129.42 temperature 10.0 1440 > th dose independent rect. 4 6
526 129.42 atmosphere 995.0 1440 > th dose independent rect. 4 6
527 129.42 atmosphere 1015.0 1440 < th dose independent rect. 4 6
528 129.42 temperature 10.0 1440 > th dose independent rect. 10 18
534 129.46 atmosphere 995.0 270 > th dose independent rect. 18 8
564 129.52 atmosphere 995.0 10 > th dose independent rect. 9 18
576 129.56 atmosphere 995.0 90 > th dose dependent rect. 3 5
583 129.62 radiation 1.0 270 > th dose independent rect. 6 7
596 129.65 radiation 10.0 270 < th dose independent rect. 18 8
600 129.66 temperature 10.0 270 > th dose independent rect. 18 8
601 129.66 humidity 50.0 270 > th dose independent rect. 18 8
606 129.66 temperature 10.0 270 > th dose independent rect. 2 16
607 129.66 atmosphere 1015.0 270 < th dose independent rect. 2 16
641 129.83 temperature 10.0 270 > th dose dependent rect. 3 3
668 129.91 atmosphere 1015.0 270 < th dose dependent rect. 3 2
682 129.99 wind 1.0 270 > th dose independent rect. 11 9
693 130.03 precipitation 0.1 90 < th dose independent rect. 8 7
700 130.03 precipitation 0.1 90 < th dose dependent rect. 8 7
744 130.16 temperature 10.0 90 > th dose dependent rect. 8 19
779 130.33 temperature 10.0 10 > th dose dependent rect. 9 5
791 130.37 precipitation 0.1 270 < th dose independent rect. 11 10
793 130.37 humidity 50.0 270 > th dose dependent rect. 19 7
794 130.37 precipitation 0.1 270 < th dose dependent rect. 11 10
810 130.44 atmosphere 995.0 270 > th dose dependent rect. 3 2
813 130.45 temperature 10.0 90 > th dose dependent rect. 3 5
823 130.48 atmosphere 1015.0 270 < th dose independent rect. 13 17
837 130.55 temperature 30.0 270 < th dose independent rect. 19 7
852 130.57 precipitation 0.1 270 < th dose independent rect. 12 8
854 130.57 precipitation 0.1 270 < th dose dependent rect. 12 8
878 130.66 precipitation 0.1 270 < th dose independent rect. 18 8
881 130.66 precipitation 0.1 270 < th dose dependent rect. 18 8
917 130.76 radiation 1.0 90 > th dose independent rect. 8 7
944 130.84 radiation 20.0 10 < th dose independent rect. 4 18
955 130.92 wind 1.0 270 > th dose independent rect. 7 18
962 130.95 temperature 10.0 270 > th dose dependent rect. 9 1
980 131.05 radiation 40.0 10 < th dose dependent rect. 4 18
1000 131.08 wind 9.0 1440 < th dose independent rect. 4 5