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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0578700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.02 (0.0287) R2 : 0.393
β1 : 0.784 (0.105) R2dD : 0.0768 R2D : 0.0396
β2 : 1.12 (0.074) R2dC : 0.307 R2C : 0.281
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.35 (0.0613) R2dN8 : 0.0582 R2N8 : 0.0158
σ : 0.54
deviance : 132.79
__
_____
C
peak time of C : 16.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.49 0.505 4.03 0.818 1.34 0.878 1.32 0.799 0.375 17.8 76 871 -- --
116.4 0.502 4.03 0.868 1.3 0.9 1.13 -- 0.381 17.8 76.38 888 -- --
119.3 0.509 4.03 0.835 1.32 0.896 -- 0.573 0.385 17.8 77 887 -- --
119.54 0.509 4.02 0.86 1.3 0.895 -- -- 0.385 17.8 76.32 889 -- --
174.42 0.615 4 0.746 -- 1.25 -- 0.876 0.364 -- 77.98 1262 -- --
130.12 0.535 4.02 0.778 1.12 -- 1.01 -- 0.345 16.7 -- -- -- --
132.79 0.54 4.02 0.784 1.12 -- -- -- 0.35 16.6 -- -- -- --
175.09 0.616 3.99 0.842 -- 1.32 -- -- 0.39 -- 77.91 1262 -- --
137.62 0.546 4.04 -- 1.2 0.791 -- -- 0.33 17.8 83.55 911 -- --
199.87 0.661 4.01 0.741 -- -- -- -- 0.321 -- -- -- -- --
148.99 0.571 4.04 -- 1.11 -- -- -- 0.263 16.7 -- -- -- --
191.76 0.645 4 -- -- 1.1 -- -- 0.379 -- 85.94 1228 -- --
214.36 0.683 4.03 -- -- -- -- -- 0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.90 humidity 90.0 720 > th dose dependent rect. 17 7
7 112.59 humidity 90.0 720 > th dose dependent rect. 12 12
10 112.93 humidity 90.0 720 > th dose dependent rect. 9 15
18 113.65 humidity 90.0 720 > th dose dependent rect. 19 2
36 114.61 humidity 80.0 1440 > th dose independent rect. 11 1
37 114.61 humidity 80.0 1440 < th dose independent rect. 11 1
39 114.65 humidity 70.0 720 > th dose dependent rect. 10 16
49 115.03 humidity 90.0 720 > th dose dependent sin 19 NA
55 115.27 humidity 80.0 1440 < th dose independent rect. 9 5
63 115.42 precipitation 0.1 1440 < th dose independent rect. 5 1
64 115.42 precipitation 0.1 1440 < th dose dependent rect. 5 1
74 115.69 precipitation 0.1 1440 > th dose independent rect. 5 1
78 115.74 precipitation 0.1 1440 > th dose dependent rect. 5 1
79 115.75 humidity 80.0 1440 < th dose independent rect. 3 12
91 115.85 humidity 80.0 1440 > th dose independent rect. 9 5
92 115.86 radiation 1.0 720 < th dose dependent rect. 13 13
96 115.90 radiation 1.0 720 < th dose dependent rect. 11 15
102 115.96 precipitation 0.1 14400 > th dose dependent rect. 17 1
108 116.00 precipitation 0.1 14400 > th dose dependent rect. 5 1
122 116.07 wind 3.0 43200 < th dose dependent rect. 24 4
132 116.17 precipitation 0.1 14400 < th dose independent rect. 5 1
133 116.17 precipitation 0.1 14400 < th dose dependent rect. 5 1
134 116.18 precipitation 0.1 14400 < th dose independent rect. 17 1
136 116.18 precipitation 0.1 14400 < th dose dependent rect. 17 1
137 116.19 humidity 70.0 720 > th dose dependent sin 17 NA
154 116.28 humidity 90.0 720 > th dose independent rect. 16 8
158 116.29 humidity 70.0 1440 > th dose dependent rect. 11 2
159 116.30 humidity 70.0 1440 > th dose dependent rect. 10 4
165 116.34 precipitation 0.1 14400 > th dose independent rect. 5 1
170 116.37 wind 3.0 14400 < th dose dependent rect. 2 2
178 116.40 precipitation 0.1 14400 > th dose independent rect. 17 1
180 116.41 humidity 70.0 14400 > th dose independent rect. 19 13
186 116.44 radiation 1.0 720 < th dose dependent rect. 7 19
192 116.47 humidity 80.0 1440 > th dose independent rect. 4 11
194 116.48 humidity 80.0 1440 < th dose independent sin 3 NA
243 116.67 humidity 80.0 720 > th dose independent rect. 9 17
245 116.68 humidity 80.0 14400 > th dose independent rect. 14 2
246 116.68 humidity 90.0 720 < th dose independent rect. 18 5
262 116.76 humidity 80.0 720 < th dose independent rect. 10 14
288 116.83 humidity 80.0 720 < th dose independent rect. 10 11
322 116.94 atmosphere 1005.0 43200 > th dose independent rect. 2 1
339 116.99 radiation 1.0 720 > th dose independent rect. 10 9
363 117.05 humidity 80.0 1440 > th dose independent sin 2 NA
364 117.05 humidity 80.0 14400 < th dose independent rect. 14 1
370 117.06 humidity 80.0 720 > th dose independent rect. 6 20
377 117.07 wind 3.0 43200 < th dose dependent rect. 23 6
383 117.09 wind 9.0 43200 < th dose dependent rect. 12 1
395 117.14 wind 1.0 43200 > th dose dependent rect. 12 1
403 117.17 humidity 70.0 14400 < th dose independent rect. 18 14
411 117.21 precipitation 0.1 4320 > th dose dependent rect. 8 9
418 117.23 atmosphere 1005.0 43200 < th dose independent rect. 2 1
426 117.25 humidity 90.0 720 > th dose independent rect. 12 12
471 117.36 humidity 70.0 14400 < th dose independent rect. 18 1
486 117.38 precipitation 0.1 43200 > th dose dependent rect. 19 1
487 117.38 precipitation 0.1 4320 > th dose dependent rect. 11 6
499 117.43 precipitation 0.1 4320 < th dose independent rect. 13 4
501 117.43 precipitation 0.1 4320 < th dose dependent rect. 13 4
535 117.51 precipitation 0.1 4320 > th dose independent rect. 11 6
551 117.54 precipitation 0.1 4320 > th dose independent rect. 8 9
554 117.54 precipitation 0.1 4320 > th dose dependent rect. 13 4
565 117.57 precipitation 0.1 4320 > th dose independent rect. 13 4
566 117.57 precipitation 0.1 4320 < th dose independent rect. 8 9
571 117.57 precipitation 0.1 4320 < th dose dependent rect. 8 9
574 117.58 precipitation 0.1 4320 < th dose independent rect. 11 6
577 117.58 precipitation 0.1 4320 < th dose dependent rect. 11 6
584 117.59 humidity 70.0 720 > th dose dependent rect. 10 22
598 117.63 radiation 1.0 720 < th dose independent rect. 13 13
615 117.67 humidity 80.0 43200 < th dose independent rect. 5 3
637 117.71 radiation 1.0 720 < th dose independent rect. 11 15
665 117.79 humidity 70.0 14400 < th dose independent rect. 18 4
700 117.84 wind 9.0 14400 > th dose dependent rect. 10 1
744 117.93 humidity 60.0 720 > th dose dependent rect. 13 20
766 117.98 humidity 80.0 720 < th dose independent sin 19 NA
782 118.02 atmosphere 1005.0 43200 > th dose independent rect. 11 1
784 118.02 humidity 80.0 1440 > th dose dependent rect. 6 5
788 118.03 humidity 80.0 720 > th dose independent sin 19 NA
801 118.06 precipitation 0.1 43200 < th dose independent rect. 19 1
805 118.06 precipitation 0.1 43200 < th dose dependent rect. 19 1
856 118.16 precipitation 0.1 43200 > th dose independent rect. 19 1
886 118.21 humidity 70.0 720 > th dose dependent no NA NA
899 118.23 atmosphere 1005.0 43200 < th dose independent rect. 11 1
902 118.24 wind 3.0 43200 < th dose independent rect. 7 6
911 118.25 humidity 70.0 14400 > th dose independent rect. 18 9
928 118.26 humidity 70.0 14400 > th dose independent rect. 18 7
938 118.27 humidity 70.0 14400 > th dose independent rect. 18 4
957 118.29 humidity 70.0 1440 > th dose dependent rect. 4 11
976 118.33 humidity 70.0 14400 > th dose dependent rect. 14 1
977 118.33 radiation 1.0 720 < th dose dependent rect. 13 5