Os07g0578600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 5-formyltetrahydrofolate cycloligase (EC 6.3.3.2).
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Os07g0578600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 5-formyltetrahydrofolate cycloligase (EC 6.3.3.2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.78 | 0.261 | 10.3 | 0.0352 | 0.5 | -0.27 | 0.252 | 3.09 | -0.203 | 22.8 | 26.4 | 30 | -- | -- |
| 33.16 | 0.27 | 10.3 | -0.244 | 0.517 | -0.0297 | 0.0768 | -- | -0.261 | 22.8 | 23.22 | 196 | -- | -- |
| 30.97 | 0.259 | 10.3 | 0.0154 | 0.502 | -0.291 | -- | 3.4 | -0.214 | 22.8 | 27.04 | 30 | -- | -- |
| 33.08 | 0.268 | 10.3 | -0.208 | 0.54 | -0.0977 | -- | -- | -0.234 | 22.8 | 20.05 | 3727 | -- | -- |
| 44.81 | 0.313 | 10.2 | 0.0996 | -- | -0.569 | -- | 3.47 | -0.185 | -- | 26.3 | 9 | -- | -- |
| 33.17 | 0.27 | 10.3 | -0.249 | 0.523 | -- | 0.0776 | -- | -0.266 | 22.9 | -- | -- | -- | -- |
| 33.2 | 0.27 | 10.3 | -0.252 | 0.522 | -- | -- | -- | -0.266 | 22.9 | -- | -- | -- | -- |
| 46.21 | 0.317 | 10.3 | -0.166 | -- | -0.433 | -- | -- | -0.194 | -- | 18.1 | 2 | -- | -- |
| 33.95 | 0.271 | 10.3 | -- | 0.516 | -0.18 | -- | -- | -0.203 | 22.9 | 17.09 | 2979 | -- | -- |
| 50.14 | 0.331 | 10.3 | -0.241 | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
| 34.88 | 0.276 | 10.3 | -- | 0.52 | -- | -- | -- | -0.238 | 22.9 | -- | -- | -- | -- |
| 46.7 | 0.318 | 10.3 | -- | -- | -0.549 | -- | -- | -0.171 | -- | 15.3 | 2 | -- | -- |
| 51.67 | 0.336 | 10.3 | -- | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 3 | 29.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 8 | 29.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 10 | 29.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 23 | 30.07 | wind | 9 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 28 | 30.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 51 | 30.15 | wind | 9 | 4320 | > th | dose dependent | rect. | 15 | 13 |
| 64 | 30.19 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 87 | 30.27 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 89 | 30.27 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 90 | 30.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 92 | 30.28 | wind | 9 | 4320 | > th | dose dependent | sin | 14 | NA |
| 98 | 30.29 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 99 | 30.29 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 105 | 30.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 106 | 30.30 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 115 | 30.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 116 | 30.32 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 122 | 30.33 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 134 | 30.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 142 | 30.36 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 151 | 30.37 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 164 | 30.38 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 168 | 30.39 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 172 | 30.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 180 | 30.40 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 191 | 30.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 194 | 30.41 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 208 | 30.42 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 218 | 30.43 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 226 | 30.44 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 230 | 30.45 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 239 | 30.46 | wind | 5 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 250 | 30.47 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 261 | 30.48 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 262 | 30.48 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 268 | 30.48 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 277 | 30.49 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 282 | 30.49 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 283 | 30.49 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 285 | 30.49 | wind | 9 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 303 | 30.50 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 321 | 30.51 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 324 | 30.51 | wind | 7 | 1440 | < th | dose independent | rect. | 18 | 15 |
| 325 | 30.51 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 326 | 30.51 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 337 | 30.52 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 387 | 30.55 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 388 | 30.55 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 410 | 30.56 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 422 | 30.57 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 426 | 30.57 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 470 | 30.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 505 | 30.60 | wind | 7 | 1440 | < th | dose independent | sin | 12 | NA |
| 523 | 30.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 562 | 30.62 | wind | 9 | 4320 | > th | dose independent | sin | 13 | NA |
| 571 | 30.62 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 580 | 30.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 593 | 30.63 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 729 | 30.67 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 755 | 30.68 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 795 | 30.69 | wind | 5 | 1440 | > th | dose dependent | sin | 12 | NA |
| 883 | 30.72 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 1 |
| 935 | 30.73 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |