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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0574900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.018) R2 : 0.00791
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0723 (0.0379) R2dN8 : 0.0102 R2N8 : 0.00791
σ : 0.339
deviance : 52.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.27 0.333 3.11 0.852 0.0705 0.434 -0.011 -3.24 -0.0149 10.8 29.97 1402 -- --
51.41 0.334 3.16 0.327 0.104 0.302 0.197 -- 0.0452 9.88 21 6532 -- --
50.27 0.33 3.11 0.852 0.0706 0.434 -- -3.24 -0.0148 10.9 29.97 1402 -- --
51 0.333 3.17 0.352 0.0775 0.298 -- -- 0.0336 9.71 19.9 6608 -- --
50.57 0.331 3.11 0.857 -- 0.448 -- -3.31 -0.0148 -- 29.9 1370 -- --
51.95 0.338 3.19 0.127 0.0833 -- -0.0339 -- -0.058 10.6 -- -- -- --
51.95 0.338 3.19 0.126 0.0833 -- -- -- -0.058 10.7 -- -- -- --
51.31 0.334 3.18 0.292 -- 0.24 -- -- 0.0189 -- 20.64 6546 -- --
51.99 0.336 3.19 -- 0.0673 0.092 -- -- -0.0389 9.73 23.9 2191 -- --
52.38 0.338 3.19 0.124 -- -- -- -- -0.0585 -- -- -- -- --
52.37 0.339 3.2 -- 0.0824 -- -- -- -0.0721 10.6 -- -- -- --
52.25 0.337 3.19 -- -- 0.108 -- -- -0.0363 -- 23.9 2203 -- --
52.79 0.339 3.2 -- -- -- -- -- -0.0723 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.82 wind 1.0 10 < th dose independent rect. 15 7
2 41.86 wind 1.0 10 < th dose independent rect. 17 5
4 41.86 wind 1.0 10 < th dose dependent rect. 15 7
5 41.88 wind 1.0 10 < th dose dependent rect. 17 5
7 41.89 wind 1.0 10 < th dose independent rect. 21 1
11 41.89 wind 1.0 10 < th dose dependent rect. 21 1
21 47.30 precipitation 0.1 270 > th dose independent rect. 20 1
22 47.30 precipitation 0.1 270 > th dose dependent rect. 20 1
23 47.73 atmosphere 1005.0 90 > th dose dependent rect. 20 1
24 47.81 atmosphere 1005.0 10 > th dose dependent rect. 20 3
25 47.83 temperature 20.0 90 > th dose dependent rect. 20 1
26 47.87 atmosphere 1005.0 30 > th dose independent rect. 20 3
27 47.90 temperature 20.0 10 > th dose dependent rect. 20 3
31 47.97 atmosphere 1005.0 90 > th dose independent rect. 20 1
52 48.38 temperature 20.0 90 > th dose independent rect. 20 1
54 48.43 wind 1.0 90 > th dose independent rect. 20 1
55 48.44 wind 5.0 90 < th dose independent rect. 20 1
65 48.58 humidity 80.0 90 > th dose independent rect. 20 1
66 48.60 temperature 20.0 30 > th dose independent rect. 20 3
67 48.60 humidity 60.0 90 > th dose dependent rect. 20 1
72 48.71 wind 9.0 90 < th dose independent rect. 21 23
74 48.73 precipitation 0.1 90 < th dose independent rect. 20 1
75 48.73 precipitation 0.1 90 < th dose dependent rect. 20 1
76 48.74 wind 9.0 90 < th dose dependent rect. 20 1
80 48.78 wind 5.0 30 < th dose independent rect. 20 3
83 48.80 atmosphere 995.0 10 > th dose independent rect. 10 10
87 48.83 atmosphere 995.0 30 > th dose independent rect. 23 21
90 48.85 wind 7.0 10 < th dose dependent rect. 20 3
91 48.86 wind 5.0 14400 < th dose independent rect. 11 1
93 48.86 temperature 10.0 90 > th dose independent rect. 20 1
95 48.86 temperature 30.0 90 < th dose independent rect. 20 1
96 48.86 humidity 50.0 90 > th dose independent rect. 20 1
99 48.86 atmosphere 995.0 90 > th dose independent rect. 20 1
100 48.86 atmosphere 1010.0 90 < th dose independent rect. 20 1
102 48.86 radiation 1.0 90 < th dose independent rect. 20 1
109 48.86 temperature 10.0 90 > th dose independent rect. 21 23
110 48.86 radiation 1.0 90 < th dose dependent rect. 20 1
117 48.88 wind 7.0 10 < th dose independent rect. 20 14
125 48.93 wind 9.0 10 < th dose independent rect. 10 10
127 48.96 precipitation 0.1 10 < th dose independent rect. 10 10
129 48.96 precipitation 0.1 10 < th dose dependent rect. 10 10
130 48.98 wind 5.0 14400 > th dose independent rect. 11 1
131 48.99 precipitation 0.1 30 < th dose independent rect. 20 3
132 48.99 precipitation 0.1 30 < th dose dependent rect. 20 3
137 49.01 humidity 80.0 30 > th dose independent rect. 20 3
138 49.01 temperature 10.0 10 > th dose independent rect. 10 10
140 49.01 atmosphere 1015.0 10 < th dose independent rect. 10 10
141 49.01 temperature 10.0 10 > th dose independent rect. 20 14
143 49.01 humidity 50.0 10 > th dose independent rect. 20 14
144 49.01 atmosphere 995.0 10 > th dose independent rect. 20 14
149 49.03 wind 9.0 30 < th dose dependent rect. 23 21
152 49.05 wind 1.0 10 > th dose independent rect. 10 10
153 49.05 humidity 50.0 30 > th dose dependent rect. 20 3
168 49.07 radiation 10.0 4320 < th dose dependent rect. 21 3
178 49.09 precipitation 0.1 30 < th dose independent rect. 20 14
181 49.09 precipitation 0.1 30 < th dose dependent rect. 20 14
187 49.12 temperature 10.0 1440 > th dose independent rect. 11 10
190 49.12 temperature 10.0 1440 > th dose independent rect. 21 14
193 49.12 atmosphere 995.0 1440 > th dose independent rect. 21 14
194 49.12 wind 5.0 30 < th dose independent rect. 23 21
200 49.13 wind 9.0 10 < th dose independent rect. 23 21
205 49.14 wind 9.0 30 < th dose dependent rect. 10 10
209 49.15 humidity 70.0 4320 > th dose independent rect. 21 3
212 49.16 temperature 10.0 30 > th dose independent rect. 20 3
214 49.16 temperature 10.0 1440 > th dose independent rect. 21 3
217 49.16 temperature 30.0 30 < th dose independent rect. 20 3
218 49.16 temperature 30.0 1440 < th dose independent rect. 21 3
222 49.16 humidity 50.0 30 > th dose independent rect. 20 3
225 49.16 humidity 50.0 1440 > th dose independent rect. 21 3
231 49.16 atmosphere 995.0 30 > th dose independent rect. 20 3
232 49.16 atmosphere 995.0 1440 > th dose independent rect. 21 3
233 49.16 atmosphere 1010.0 30 < th dose independent rect. 20 3
235 49.16 radiation 1.0 30 < th dose independent rect. 20 3
240 49.16 radiation 1.0 1440 < th dose independent rect. 21 3
260 49.16 temperature 10.0 30 > th dose independent rect. 23 21
262 49.16 temperature 10.0 1440 > th dose independent rect. 24 21
265 49.16 radiation 1.0 30 < th dose dependent rect. 20 3
282 49.18 atmosphere 1015.0 10 < th dose independent rect. 20 14
285 49.18 wind 3.0 14400 > th dose dependent rect. 11 1
313 49.20 temperature 10.0 10 > th dose dependent rect. 23 21
321 49.23 wind 3.0 14400 > th dose dependent rect. 9 3
322 49.23 temperature 10.0 30 > th dose dependent rect. 10 10
340 49.28 humidity 80.0 14400 < th dose dependent rect. 1 8
341 49.29 radiation 10.0 43200 < th dose dependent rect. 21 2
362 49.34 humidity 80.0 14400 < th dose dependent rect. 7 1
366 49.35 wind 9.0 10 < th dose dependent rect. 20 14
425 49.44 temperature 30.0 30 < th dose independent rect. 20 14
447 49.45 wind 5.0 14400 < th dose independent rect. 8 7
496 49.47 precipitation 0.1 30 < th dose independent rect. 23 21
503 49.47 precipitation 0.1 30 < th dose dependent rect. 23 21
506 49.48 wind 5.0 14400 > th dose independent rect. 8 7
547 49.57 wind 7.0 14400 < th dose dependent rect. 10 2
558 49.59 humidity 90.0 10 > th dose independent rect. 22 1
560 49.59 wind 9.0 1440 < th dose independent rect. 21 3
622 49.68 atmosphere 1010.0 30 < th dose independent rect. 23 21
649 49.73 radiation 40.0 10 < th dose independent rect. 23 21
663 49.76 radiation 1.0 30 < th dose dependent rect. 23 21
674 49.79 wind 5.0 14400 < th dose independent sin 2 NA
683 49.80 wind 5.0 14400 > th dose independent sin 2 NA
705 49.83 wind 5.0 14400 > th dose independent rect. 24 17
707 49.83 wind 5.0 14400 < th dose independent rect. 23 18
717 49.84 radiation 1.0 90 < th dose independent rect. 22 22
745 49.88 precipitation 0.1 14400 > th dose independent rect. 24 9
765 49.90 precipitation 0.1 14400 < th dose independent rect. 24 9
780 49.90 precipitation 0.1 14400 < th dose dependent rect. 24 9
782 49.91 humidity 60.0 43200 < th dose independent rect. 11 1
795 49.92 wind 5.0 14400 > th dose independent rect. 2 15
848 49.95 atmosphere 1005.0 10 > th dose dependent rect. 12 11
859 49.96 wind 5.0 14400 < th dose independent rect. 8 19
865 49.96 atmosphere 1005.0 10 > th dose dependent rect. 14 9
871 49.97 humidity 80.0 14400 < th dose independent rect. 7 1
879 49.97 wind 5.0 14400 > th dose independent rect. 8 19
891 49.97 wind 9.0 30 < th dose dependent rect. 23 13
893 49.98 humidity 70.0 14400 > th dose independent rect. 8 1
907 49.98 precipitation 0.1 14400 > th dose dependent rect. 24 9