Os07g0573800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyridoxamine 5'-phosphate oxidase-related, FMN-binding domain containing protein.
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Os07g0573800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyridoxamine 5'-phosphate oxidase-related, FMN-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.02 | 0.249 | 13.4 | 0.0473 | 0.198 | -0.611 | -0.181 | 0.399 | -0.239 | 21.9 | 20.06 | 3510 | -- | -- |
| 28.2 | 0.247 | 13.4 | -0.0156 | 0.205 | -0.68 | -0.15 | -- | -0.261 | 21.9 | 19.9 | 3510 | -- | -- |
| 28.14 | 0.247 | 13.4 | 0.0516 | 0.199 | -0.616 | -- | 0.379 | -0.239 | 21.9 | 20.06 | 3510 | -- | -- |
| 28.29 | 0.248 | 13.4 | -0.00354 | 0.2 | -0.693 | -- | -- | -0.259 | 21.9 | 19.92 | 3510 | -- | -- |
| 30.24 | 0.256 | 13.3 | 0.0464 | -- | -0.623 | -- | 0.365 | -0.251 | -- | 19.9 | 3099 | -- | -- |
| 36.71 | 0.284 | 13.4 | -0.412 | 0.178 | -- | -0.192 | -- | -0.433 | 21.6 | -- | -- | -- | -- |
| 36.85 | 0.284 | 13.4 | -0.405 | 0.179 | -- | -- | -- | -0.433 | 21.7 | -- | -- | -- | -- |
| 30.38 | 0.257 | 13.4 | -0.0231 | -- | -0.676 | -- | -- | -0.261 | -- | 19.93 | 3098 | -- | -- |
| 28.29 | 0.248 | 13.4 | -- | 0.201 | -0.698 | -- | -- | -0.252 | 21.9 | 19.91 | 3510 | -- | -- |
| 38.75 | 0.291 | 13.4 | -0.403 | -- | -- | -- | -- | -0.433 | -- | -- | -- | -- | -- |
| 41.17 | 0.3 | 13.4 | -- | 0.178 | -- | -- | -- | -0.388 | 21.6 | -- | -- | -- | -- |
| 30.39 | 0.257 | 13.4 | -- | -- | -0.689 | -- | -- | -0.257 | -- | 20 | 3017 | -- | -- |
| 43.04 | 0.306 | 13.4 | -- | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 2 | 26.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 4 | 26.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 31 | 27.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 45 | 27.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 48 | 27.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 153 | 27.99 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 157 | 28.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 167 | 28.02 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 197 | 28.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 203 | 28.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 207 | 28.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 217 | 28.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 245 | 28.16 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 266 | 28.18 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 389 | 28.31 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 667 | 28.62 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 743 | 28.69 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 798 | 28.74 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 808 | 28.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 840 | 28.78 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 848 | 28.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 900 | 28.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 949 | 28.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |