Os07g0573500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os07g0573500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.82 | 0.39 | 3.13 | 0.0238 | 0.187 | 0.932 | -0.426 | 0.103 | -0.0772 | 6.16 | 19.34 | 25 | -- | -- |
| 68.82 | 0.386 | 3.13 | 0.025 | 0.188 | 0.905 | -0.415 | -- | -0.0745 | 6.15 | 19.36 | 24 | -- | -- |
| 69.19 | 0.387 | 3.13 | 0.0226 | 0.189 | 0.905 | -- | 0.0228 | -0.0727 | 6.85 | 19.4 | 24 | -- | -- |
| 69.19 | 0.387 | 3.13 | 0.0228 | 0.188 | 0.896 | -- | -- | -0.074 | 6.89 | 19.4 | 24 | -- | -- |
| 71.03 | 0.393 | 3.13 | 0.026 | -- | 0.935 | -- | 0.109 | -0.0705 | -- | 19.4 | 24 | -- | -- |
| 72.67 | 0.4 | 3.14 | -0.0999 | 0.191 | -- | -0.481 | -- | -0.119 | 5.43 | -- | -- | -- | -- |
| 73.16 | 0.401 | 3.14 | -0.1 | 0.192 | -- | -- | -- | -0.117 | 6.14 | -- | -- | -- | -- |
| 71.04 | 0.393 | 3.13 | 0.0266 | -- | 0.888 | -- | -- | -0.0702 | -- | 19.44 | 24 | -- | -- |
| 69.2 | 0.387 | 3.13 | -- | 0.188 | 0.881 | -- | -- | -0.0771 | 6.86 | 19.4 | 24 | -- | -- |
| 75.07 | 0.405 | 3.14 | -0.0949 | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
| 73.43 | 0.401 | 3.14 | -- | 0.19 | -- | -- | -- | -0.106 | 6.16 | -- | -- | -- | -- |
| 71.05 | 0.393 | 3.13 | -- | -- | 0.872 | -- | -- | -0.0738 | -- | 19.43 | 24 | -- | -- |
| 75.31 | 0.405 | 3.14 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.78 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 11 | 67.47 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 20 |
| 15 | 67.74 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 24 | 67.89 | temperature | 20.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 25 | 67.90 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 26 | 67.92 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 30 | 67.97 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 2 |
| 31 | 67.98 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 13 |
| 33 | 67.99 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 38 | 68.00 | temperature | 15.0 | 90 | > th | dose independent | rect. | 6 | 23 |
| 41 | 68.01 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 42 | 68.01 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 5 | 20 |
| 52 | 68.09 | temperature | 15.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 59 | 68.15 | temperature | 20.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 61 | 68.17 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 1 | 5 |
| 70 | 68.22 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 24 | 11 |
| 72 | 68.22 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 3 |
| 88 | 68.27 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 22 | 2 |
| 105 | 68.31 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 111 | 68.34 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 115 | 68.35 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 122 | 68.37 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 137 | 68.39 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 144 | 68.41 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 150 | 68.41 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 234 | 68.55 | temperature | 15.0 | 720 | > th | dose independent | rect. | 7 | 11 |
| 260 | 68.59 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 303 | 68.63 | temperature | 15.0 | 720 | > th | dose independent | rect. | 6 | 13 |
| 305 | 68.63 | temperature | 15.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 332 | 68.66 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 346 | 68.67 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 366 | 68.69 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 23 |
| 376 | 68.70 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 392 | 68.72 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 393 | 68.72 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 396 | 68.72 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 445 | 68.76 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 447 | 68.76 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 478 | 68.78 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 11 | 13 |
| 488 | 68.79 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 494 | 68.80 | temperature | 20.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 504 | 68.81 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 511 | 68.81 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 14 |
| 517 | 68.82 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 569 | 68.85 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 597 | 68.86 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 613 | 68.87 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 617 | 68.87 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 618 | 68.87 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 627 | 68.88 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 653 | 68.89 | humidity | 50.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 672 | 68.90 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 673 | 68.90 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 686 | 68.90 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 720 | 68.92 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 778 | 68.94 | temperature | 20.0 | 30 | < th | dose dependent | no | NA | NA |
| 815 | 68.96 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 817 | 68.96 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 818 | 68.96 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 871 | 68.98 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 940 | 69.00 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 964 | 69.01 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 23 |