Os07g0572500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0572500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.73 | 0.481 | 6.56 | 2.67 | 0.26 | -2.46 | -0.157 | 1.39 | 0.678 | 10.1 | 23.27 | 12 | -- | -- |
| 105.54 | 0.482 | 6.58 | 2.44 | 0.271 | -2.36 | 0.0158 | -- | 0.606 | 9.51 | 23.21 | 9 | -- | -- |
| 104.81 | 0.477 | 6.56 | 2.64 | 0.26 | -2.44 | -- | 1.26 | 0.67 | 9.99 | 23.27 | 12 | -- | -- |
| 105.54 | 0.482 | 6.58 | 2.44 | 0.271 | -2.36 | -- | -- | 0.606 | 9.51 | 23.2 | 9 | -- | -- |
| 106.58 | 0.481 | 6.57 | 2.67 | -- | -2.31 | -- | 1.54 | 0.657 | -- | 23.2 | 65 | -- | -- |
| 189.51 | 0.645 | 6.65 | 2.03 | 0.899 | -- | 0.781 | -- | 0.278 | 3.86 | -- | -- | -- | -- |
| 191.31 | 0.648 | 6.66 | 2.02 | 0.904 | -- | -- | -- | 0.273 | 3.85 | -- | -- | -- | -- |
| 108.14 | 0.484 | 6.59 | 2.44 | -- | -2.22 | -- | -- | 0.589 | -- | 23.2 | 64 | -- | -- |
| 250.84 | 0.742 | 6.68 | -- | 0.341 | -1.76 | -- | -- | 0.174 | 5.85 | 24.8 | 3 | -- | -- |
| 236.21 | 0.718 | 6.66 | 2.05 | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
| 298.5 | 0.808 | 6.71 | -- | 0.943 | -- | -- | -- | 0.0488 | 3.83 | -- | -- | -- | -- |
| 255.88 | 0.747 | 6.68 | -- | -- | -1.95 | -- | -- | 0.198 | -- | 24.74 | 3 | -- | -- |
| 347.5 | 0.87 | 6.71 | -- | -- | -- | -- | -- | 0.0697 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.88 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 3 | 107.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 4 | 107.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 5 | 107.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 8 | 107.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 9 | 107.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 13 | 107.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 14 | 107.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 15 | 107.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 22 | 108.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 23 | 108.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 35 | 108.17 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 53 | 108.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 65 | 108.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 78 | 109.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 79 | 109.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 11 |
| 81 | 109.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 112 | 109.51 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 123 | 109.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 13 |
| 149 | 110.14 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 151 | 110.25 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 189 | 110.92 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 240 | 111.38 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 448 | 113.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 453 | 113.87 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 534 | 114.67 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 538 | 114.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 605 | 115.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 765 | 117.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 784 | 118.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 855 | 118.93 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 877 | 119.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 878 | 119.13 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 894 | 119.30 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 922 | 119.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |