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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0570900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0186) R2 : 0.00263
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0429 (0.0391) R2dN8 : 0.00339 R2N8 : 0.00263
σ : 0.35
deviance : 56.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.04 0.336 3.25 0.268 0.163 -0.205 -0.336 -1.24 0.00537 6.2 69 5852 -- --
53.21 0.34 3.25 0.122 0.168 -0.288 -0.38 -- -0.0464 6.25 79 6994 -- --
51.3 0.334 3.25 0.268 0.166 -0.201 -- -1.25 0.00757 6.35 69.68 5914 -- --
53.47 0.341 3.25 0.111 0.158 -0.273 -- -- -0.0484 6.69 79 6966 -- --
52.67 0.338 3.26 0.276 -- -0.21 -- -1.24 0.00794 -- 69.59 5789 -- --
54.42 0.346 3.23 0.0674 0.163 -- -0.357 -- 0.0456 6.12 -- -- -- --
54.73 0.346 3.23 0.0642 0.161 -- -- -- 0.047 6.36 -- -- -- --
54.8 0.345 3.25 0.112 -- -0.275 -- -- -0.0462 -- 79 7009 -- --
53.78 0.342 3.25 -- 0.161 -0.246 -- -- -0.0513 6.66 78.7 6979 -- --
56.08 0.35 3.23 0.0684 -- -- -- -- 0.0505 -- -- -- -- --
54.84 0.346 3.23 -- 0.162 -- -- -- 0.0399 6.33 -- -- -- --
55.13 0.346 3.25 -- -- -0.246 -- -- -0.048 -- 78.69 7007 -- --
56.2 0.35 3.23 -- -- -- -- -- 0.0429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.08 wind 1.0 30 < th dose independent rect. 2 1
3 43.11 wind 1.0 30 < th dose dependent rect. 2 1
4 43.13 temperature 15.0 30 > th dose independent rect. 3 23
6 43.16 atmosphere 1015.0 30 < th dose dependent rect. 2 1
9 43.19 atmosphere 1000.0 30 > th dose independent rect. 3 23
12 43.20 atmosphere 1005.0 30 > th dose dependent rect. 2 1
16 43.22 temperature 25.0 30 < th dose independent rect. 2 1
17 43.22 temperature 10.0 30 > th dose dependent rect. 2 1
19 43.23 temperature 10.0 30 > th dose independent rect. 2 1
22 43.23 humidity 50.0 30 > th dose independent rect. 2 1
25 43.23 atmosphere 995.0 30 > th dose independent rect. 2 1
26 43.23 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 43.23 radiation 1.0 30 < th dose independent rect. 2 1
33 43.23 precipitation 0.1 30 < th dose independent rect. 2 1
36 43.23 radiation 1.0 30 < th dose dependent rect. 2 1
41 43.23 precipitation 0.1 30 < th dose dependent rect. 2 1
42 43.24 humidity 50.0 30 > th dose dependent rect. 2 1
50 43.27 temperature 30.0 30 < th dose dependent rect. 2 1
52 43.29 atmosphere 995.0 30 > th dose dependent rect. 2 1
56 43.33 atmosphere 1005.0 30 > th dose independent rect. 2 1
92 43.52 wind 9.0 30 < th dose independent rect. 3 23
96 43.56 wind 1.0 30 > th dose independent rect. 2 1
117 44.87 precipitation 0.1 30 < th dose independent rect. 3 23
118 44.87 precipitation 0.1 30 < th dose dependent rect. 3 23
130 45.68 radiation 1.0 43200 < th dose dependent rect. 3 1
137 45.93 wind 9.0 1440 < th dose independent rect. 3 1
138 45.93 temperature 10.0 1440 > th dose independent rect. 3 1
141 45.93 temperature 30.0 1440 < th dose independent rect. 3 1
145 45.93 humidity 50.0 1440 > th dose independent rect. 3 1
154 45.93 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 45.93 radiation 1.0 1440 < th dose independent rect. 3 1
175 45.93 temperature 10.0 1440 > th dose independent rect. 4 23
178 45.93 radiation 1.0 1440 < th dose dependent rect. 3 1
198 46.42 humidity 50.0 30 > th dose independent rect. 3 23
214 47.27 humidity 90.0 90 < th dose independent rect. 2 1
283 48.86 atmosphere 1015.0 30 < th dose independent rect. 3 23
284 48.87 radiation 10.0 30 < th dose dependent rect. 3 23
292 49.06 radiation 30.0 30 > th dose dependent rect. 15 17
293 49.09 radiation 30.0 10 > th dose independent rect. 15 1
310 49.09 wind 9.0 30 < th dose dependent rect. 3 23
321 49.27 wind 1.0 10 < th dose independent rect. 11 16
335 49.40 wind 1.0 10 < th dose independent rect. 17 10
369 49.50 atmosphere 995.0 30 > th dose dependent rect. 3 23
373 49.54 radiation 10.0 30 < th dose independent rect. 3 23
376 49.59 temperature 30.0 30 < th dose independent rect. 3 23
383 49.75 radiation 30.0 30 > th dose dependent rect. 15 1
400 49.76 wind 1.0 10 < th dose independent rect. 6 21
403 49.79 wind 1.0 10 < th dose independent rect. 8 19
410 49.85 atmosphere 1000.0 10 < th dose independent rect. 15 1
417 49.85 atmosphere 995.0 720 > th dose independent rect. 23 16
425 49.90 humidity 50.0 30 > th dose dependent rect. 3 23
442 50.04 precipitation 0.1 720 < th dose independent rect. 15 8
443 50.04 precipitation 0.1 720 < th dose dependent rect. 15 8
444 50.07 wind 1.0 30 > th dose dependent rect. 2 1
468 50.21 temperature 10.0 720 > th dose independent rect. 15 8
469 50.21 temperature 10.0 720 > th dose independent rect. 23 16
471 50.23 atmosphere 1015.0 1440 < th dose independent rect. 3 1
529 50.36 wind 7.0 90 > th dose independent rect. 14 2
540 50.43 temperature 10.0 720 > th dose independent rect. 3 8
541 50.43 atmosphere 995.0 720 > th dose independent rect. 3 8
542 50.43 temperature 10.0 720 > th dose independent rect. 11 16
554 50.49 humidity 50.0 720 > th dose independent rect. 3 8
562 50.52 wind 1.0 10 > th dose independent sin 16 NA
568 50.54 precipitation 0.1 720 < th dose independent rect. 11 16
571 50.54 precipitation 0.1 720 < th dose dependent rect. 11 16
588 50.61 humidity 80.0 14400 < th dose dependent rect. 1 8
605 50.65 temperature 30.0 10 > th dose independent rect. 16 1
644 50.67 wind 1.0 10 > th dose independent rect. 8 23
663 50.71 wind 9.0 720 < th dose independent rect. 3 8
666 50.72 humidity 80.0 14400 < th dose dependent rect. 21 13
678 50.78 wind 7.0 10 > th dose dependent rect. 16 1
712 50.87 wind 7.0 90 > th dose dependent rect. 14 1
720 50.90 atmosphere 995.0 720 > th dose independent rect. 7 8
761 50.96 atmosphere 1000.0 90 < th dose independent rect. 7 10
768 50.98 atmosphere 995.0 720 > th dose independent rect. 15 8
777 51.00 radiation 40.0 90 < th dose independent rect. 13 14
789 51.05 humidity 90.0 90 < th dose independent rect. 1 7
791 51.06 atmosphere 995.0 720 > th dose independent rect. 11 16
800 51.10 precipitation 0.1 720 < th dose independent rect. 19 8
803 51.10 precipitation 0.1 720 < th dose dependent rect. 19 8
808 51.11 atmosphere 1000.0 90 < th dose independent rect. 9 7
824 51.13 precipitation 0.1 720 < th dose independent rect. 15 16
826 51.13 precipitation 0.1 720 < th dose dependent rect. 15 16
832 51.15 humidity 70.0 14400 > th dose independent rect. 8 2
843 51.17 wind 1.0 30 > th dose independent rect. 3 23
848 51.19 temperature 10.0 720 > th dose independent rect. 7 8
849 51.19 atmosphere 1015.0 720 < th dose independent rect. 7 8
850 51.19 temperature 10.0 720 > th dose independent rect. 15 16
852 51.20 wind 9.0 720 < th dose independent rect. 19 8
856 51.21 atmosphere 1000.0 90 < th dose independent rect. 11 5
866 51.21 temperature 10.0 30 > th dose dependent rect. 3 23
869 51.23 humidity 70.0 14400 < th dose independent rect. 8 2
879 51.24 humidity 70.0 720 > th dose dependent rect. 3 1
887 51.26 radiation 20.0 10 < th dose dependent rect. 14 12
888 51.27 wind 9.0 720 < th dose independent rect. 15 8
889 51.27 radiation 40.0 720 < th dose independent rect. 15 8
892 51.27 humidity 70.0 4320 > th dose dependent rect. 3 11
894 51.28 radiation 20.0 720 > th dose independent rect. 15 1
941 51.34 temperature 10.0 720 > th dose independent rect. 19 8
942 51.34 temperature 30.0 720 < th dose independent rect. 19 8
943 51.34 humidity 50.0 720 > th dose independent rect. 19 8
944 51.34 atmosphere 995.0 720 > th dose independent rect. 19 8
945 51.34 radiation 1.0 720 < th dose independent rect. 19 8
950 51.34 temperature 10.0 720 > th dose independent rect. 3 16
951 51.34 radiation 1.0 720 < th dose dependent rect. 19 8
964 51.36 atmosphere 1000.0 10 > th dose independent rect. 17 9
972 51.38 atmosphere 1000.0 90 < th dose independent rect. 24 17
976 51.39 atmosphere 1000.0 90 < th dose independent sin 22 NA
980 51.39 atmosphere 1000.0 10 > th dose independent rect. 14 12
981 51.39 radiation 10.0 10 > th dose independent rect. 15 17
988 51.40 humidity 90.0 4320 < th dose independent rect. 4 5
991 51.40 atmosphere 1000.0 30 > th dose independent rect. 8 18
992 51.40 radiation 1.0 720 > th dose dependent rect. 15 1