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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0570600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.88 (0.046) R2 : 0.18
β1 : 1.39 (0.168) R2dD : 0.128 R2D : 0.136
β2 : 0.505 (0.11) R2dC : 0.0381 R2C : 0.0348
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.167 (0.098) R2dN8 : 0.00698 R2N8 : 0.0153
σ : 0.863
deviance : 339.92
__
_____
C
peak time of C : 10.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
321.52 0.842 3.9 1.4 0.577 -0.893 -0.588 -0.163 -0.226 5.56 62.55 8 -- --
321.59 0.835 3.9 1.4 0.582 -0.902 -0.654 -- -0.228 5.48 62.79 7 -- --
322.27 0.836 3.89 1.41 0.582 -0.905 -- -0.328 -0.221 5.53 62.36 7 -- --
322.63 0.837 3.89 1.4 0.581 -0.917 -- -- -0.223 5.52 62.19 7 -- --
335.12 0.853 3.9 1.41 -- -0.621 -- -0.31 -0.193 -- 61 7 -- --
339.8 0.864 3.88 1.39 0.505 -- 0.18 -- -0.167 10.8 -- -- -- --
339.92 0.863 3.88 1.39 0.505 -- -- -- -0.167 10.6 -- -- -- --
335.42 0.853 3.9 1.4 -- -0.635 -- -- -0.192 -- 60.37 7 -- --
373.84 0.901 3.92 -- 0.598 -0.885 -- -- -0.359 5.69 62.13 20 -- --
355.64 0.881 3.89 1.38 -- -- -- -- -0.169 -- -- -- -- --
391.03 0.925 3.91 -- 0.496 -- -- -- -0.322 10.4 -- -- -- --
387.29 0.917 3.93 -- -- -0.633 -- -- -0.341 -- 58.09 7 -- --
406.08 0.941 3.93 -- -- -- -- -- -0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.31 humidity 70.0 90 > th dose dependent rect. 5 23
2 316.26 atmosphere 1005.0 90 > th dose dependent rect. 3 1
6 318.40 humidity 80.0 720 < th dose dependent rect. 18 17
11 318.81 humidity 60.0 10 > th dose dependent rect. 6 11
12 318.96 wind 1.0 1440 < th dose dependent rect. 14 2
14 319.43 wind 1.0 1440 < th dose independent rect. 14 2
17 319.80 humidity 80.0 30 < th dose independent rect. 5 15
18 319.80 radiation 20.0 30 < th dose dependent rect. 6 11
19 319.82 humidity 80.0 720 < th dose dependent sin 10 NA
25 319.98 temperature 20.0 14400 > th dose independent rect. 18 1
31 320.26 humidity 60.0 10 > th dose dependent rect. 19 23
33 320.33 wind 7.0 90 > th dose independent rect. 20 5
36 320.38 wind 7.0 90 > th dose dependent rect. 19 6
38 320.42 temperature 20.0 14400 < th dose independent rect. 18 2
46 320.57 humidity 60.0 10 > th dose dependent rect. 21 23
53 320.61 humidity 60.0 90 > th dose dependent rect. 18 23
69 320.81 wind 7.0 90 > th dose dependent rect. 21 4
87 320.96 humidity 60.0 90 > th dose dependent rect. 23 17
101 321.12 wind 1.0 1440 > th dose independent rect. 14 2
104 321.19 humidity 60.0 30 > th dose dependent rect. 9 23
113 321.29 humidity 70.0 720 > th dose independent rect. 19 16
114 321.30 humidity 90.0 10 < th dose dependent rect. 17 22
120 321.44 humidity 60.0 10 > th dose dependent rect. 11 23
121 321.44 humidity 60.0 90 > th dose dependent rect. 11 23
126 321.48 humidity 60.0 10 > th dose dependent rect. 23 23
132 321.55 humidity 70.0 720 < th dose independent rect. 18 17
135 321.56 humidity 60.0 10 > th dose dependent rect. 13 23
143 321.63 humidity 90.0 10 < th dose dependent rect. 7 23
149 321.73 humidity 60.0 10 > th dose dependent no NA NA
158 321.80 humidity 60.0 10 > th dose dependent rect. 15 23
174 321.97 humidity 90.0 10 < th dose dependent rect. 1 20
186 322.09 humidity 90.0 10 < th dose dependent rect. 5 16
190 322.10 humidity 90.0 90 < th dose dependent rect. 16 23
193 322.12 humidity 90.0 10 < th dose dependent rect. 5 22
202 322.16 humidity 90.0 10 < th dose dependent rect. 22 23
208 322.22 precipitation 0.1 4320 < th dose independent rect. 5 1
209 322.22 precipitation 0.1 4320 < th dose dependent rect. 5 1
223 322.28 humidity 60.0 90 > th dose dependent rect. 21 20
225 322.30 humidity 90.0 10 < th dose dependent rect. 7 14
237 322.35 humidity 90.0 10 < th dose dependent rect. 7 20
273 322.54 humidity 80.0 30 < th dose independent rect. 8 12
299 322.62 humidity 90.0 10 < th dose dependent rect. 7 16
315 322.73 radiation 1.0 1440 < th dose dependent rect. 3 2
320 322.74 humidity 70.0 90 > th dose dependent rect. 23 21
324 322.76 humidity 90.0 10 < th dose dependent no NA NA
354 322.91 precipitation 0.1 4320 > th dose dependent rect. 13 3
370 322.97 precipitation 0.1 4320 > th dose independent rect. 13 4
420 323.11 atmosphere 1005.0 90 > th dose independent rect. 3 1
432 323.15 humidity 80.0 30 < th dose independent sin 0 NA
434 323.18 precipitation 0.1 4320 < th dose independent rect. 13 3
436 323.18 precipitation 0.1 4320 < th dose dependent rect. 13 3
451 323.22 humidity 70.0 10 > th dose dependent rect. 6 14
455 323.24 wind 3.0 10 > th dose dependent rect. 1 6
481 323.30 humidity 80.0 90 > th dose independent rect. 23 21
497 323.36 temperature 20.0 14400 < th dose independent sin 19 NA
510 323.41 humidity 70.0 720 > th dose independent sin 9 NA
546 323.51 humidity 70.0 720 < th dose independent sin 10 NA
573 323.60 temperature 20.0 14400 > th dose independent sin 19 NA
612 323.70 humidity 80.0 10 > th dose independent rect. 6 11
616 323.71 humidity 90.0 10 < th dose dependent sin 2 NA
648 323.78 wind 1.0 720 < th dose dependent rect. 12 10
653 323.78 humidity 90.0 90 < th dose dependent rect. 17 20
657 323.80 precipitation 0.1 4320 > th dose independent rect. 5 1
666 323.83 precipitation 0.1 4320 > th dose dependent rect. 5 1
673 323.85 humidity 80.0 90 > th dose independent rect. 5 23
711 323.92 precipitation 0.1 4320 > th dose dependent rect. 3 14
717 323.94 precipitation 0.1 4320 > th dose independent rect. 3 14
722 323.95 radiation 10.0 90 < th dose independent rect. 6 10
724 323.95 humidity 90.0 90 < th dose dependent sin 7 NA
753 324.03 humidity 80.0 10 < th dose dependent sin 8 NA
768 324.08 precipitation 0.1 4320 < th dose independent rect. 3 14
773 324.08 precipitation 0.1 4320 < th dose dependent rect. 3 14
787 324.11 humidity 70.0 10 > th dose independent rect. 2 15
792 324.12 wind 1.0 43200 < th dose dependent rect. 12 18
796 324.13 temperature 25.0 14400 < th dose independent rect. 10 1
816 324.17 humidity 70.0 90 > th dose dependent rect. 1 23
823 324.19 humidity 80.0 30 > th dose independent rect. 6 14
834 324.20 precipitation 0.1 14400 > th dose dependent rect. 1 19
843 324.22 precipitation 0.1 14400 > th dose independent rect. 4 16
847 324.22 humidity 80.0 43200 < th dose dependent rect. 6 1
851 324.23 precipitation 0.1 14400 < th dose independent rect. 4 16
853 324.23 precipitation 0.1 14400 < th dose dependent rect. 4 16
886 324.28 radiation 1.0 1440 < th dose dependent rect. 21 8
898 324.30 temperature 25.0 14400 > th dose independent rect. 10 1
913 324.32 wind 3.0 14400 > th dose dependent rect. 8 1
921 324.33 precipitation 0.1 14400 > th dose independent rect. 1 19
925 324.35 precipitation 0.1 14400 < th dose independent rect. 1 19
926 324.35 wind 1.0 43200 < th dose dependent rect. 15 15
927 324.35 precipitation 0.1 14400 < th dose dependent rect. 1 19
932 324.36 temperature 20.0 14400 > th dose independent rect. 5 17
948 324.38 humidity 90.0 10 < th dose dependent rect. 14 23
951 324.39 wind 1.0 720 < th dose independent rect. 12 10
960 324.41 precipitation 0.1 14400 > th dose independent rect. 1 17
963 324.42 wind 3.0 10 > th dose independent rect. 1 5
984 324.45 precipitation 0.1 14400 > th dose dependent sin 3 NA
985 324.45 precipitation 0.1 4320 > th dose dependent rect. 4 3
992 324.47 wind 1.0 720 > th dose independent rect. 13 8
999 324.47 humidity 80.0 10 < th dose independent rect. 17 22