Os07g0570100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0570100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.75 | 0.567 | 9.26 | 2.15 | 0.942 | 2.58 | -0.543 | 1.3 | 0.921 | 1.44 | 2.383 | 1487 | -- | -- |
| 142.28 | 0.556 | 9.23 | 2.22 | 1.05 | 2.27 | -0.318 | -- | 0.979 | 1.31 | 3.776 | 1471 | -- | -- |
| 142.69 | 0.556 | 9.24 | 2.25 | 1.2 | 2.19 | -- | -0.0546 | 0.977 | 1.09 | 3.613 | 1445 | -- | -- |
| 142.6 | 0.556 | 9.23 | 2.23 | 1.08 | 2.26 | -- | -- | 0.986 | 1.2 | 3.798 | 1465 | -- | -- |
| 144.68 | 0.56 | 9.21 | 2.33 | -- | 3.22 | -- | -0.137 | 1 | -- | 3.533 | 1632 | -- | -- |
| 212.73 | 0.684 | 9.32 | 1.84 | 1.21 | -- | -0.574 | -- | 0.614 | 1.01 | -- | -- | -- | -- |
| 214.06 | 0.685 | 9.32 | 1.86 | 1.21 | -- | -- | -- | 0.618 | 0.917 | -- | -- | -- | -- |
| 144.63 | 0.56 | 9.22 | 2.26 | -- | 3.09 | -- | -- | 1.01 | -- | 3.742 | 1633 | -- | -- |
| 252.26 | 0.74 | 9.23 | -- | 0.783 | 1.82 | -- | -- | 0.816 | 1.64 | 9.769 | 1562 | -- | -- |
| 305.92 | 0.817 | 9.3 | 1.91 | -- | -- | -- | -- | 0.641 | -- | -- | -- | -- | -- |
| 305.48 | 0.818 | 9.37 | -- | 1.24 | -- | -- | -- | 0.411 | 0.982 | -- | -- | -- | -- |
| 262.69 | 0.755 | 9.27 | -- | -- | 2.45 | -- | -- | 0.746 | -- | 7.945 | 1659 | -- | -- |
| 401.9 | 0.936 | 9.35 | -- | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 4 | 143.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 8 | 144.26 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 12 | 144.48 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 14 | 144.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 17 | 144.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 18 | 144.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 22 | 144.67 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 34 | 144.99 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 44 | 145.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 45 | 145.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 50 | 145.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 51 | 145.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 54 | 145.20 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 59 | 145.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 63 | 145.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 65 | 145.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 67 | 145.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 118 | 145.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 222 | 147.19 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 295 | 148.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 302 | 148.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 305 | 148.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 308 | 148.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 310 | 148.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 320 | 148.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 322 | 148.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 335 | 148.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 355 | 148.36 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 451 | 149.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 482 | 149.26 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 530 | 149.32 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 586 | 150.01 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 639 | 150.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 655 | 150.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 659 | 150.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 707 | 151.06 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 8 |
| 712 | 151.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 713 | 151.09 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 736 | 151.32 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 749 | 151.43 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 763 | 151.49 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 791 | 151.55 | humidity | 70 | 1440 | > th | dose independent | sin | 16 | NA |
| 868 | 151.89 | humidity | 70 | 1440 | < th | dose independent | sin | 16 | NA |
| 940 | 152.41 | humidity | 50 | 1440 | > th | dose dependent | sin | 19 | NA |
| 989 | 152.76 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 990 | 152.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 993 | 152.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 994 | 152.80 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 1000 | 152.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 23 |