Os07g0569700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os07g0569700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.34 | 0.353 | 9.44 | 0.587 | 0.998 | -0.993 | 0.578 | -0.578 | 0.319 | 14.6 | 22.91 | 1976 | -- | -- |
| 56.65 | 0.351 | 9.45 | 0.513 | 0.992 | -0.899 | 0.573 | -- | 0.303 | 14.6 | 23.23 | 1886 | -- | -- |
| 57.22 | 0.352 | 9.44 | 0.535 | 1.02 | -0.892 | -- | -0.338 | 0.303 | 14.6 | 22.99 | 2672 | -- | -- |
| 57.42 | 0.353 | 9.45 | 0.464 | 1.03 | -0.845 | -- | -- | 0.284 | 14.7 | 23.12 | 2671 | -- | -- |
| 78.88 | 0.416 | 9.46 | 0.517 | -- | -1.77 | -- | -0.428 | 0.228 | -- | 38.51 | 21 | -- | -- |
| 67.07 | 0.384 | 9.41 | 0.808 | 0.985 | -- | 0.6 | -- | 0.472 | 14.7 | -- | -- | -- | -- |
| 68.31 | 0.387 | 9.41 | 0.822 | 0.986 | -- | -- | -- | 0.475 | 14.7 | -- | -- | -- | -- |
| 78.88 | 0.414 | 9.47 | 0.45 | -- | -1.79 | -- | -- | 0.209 | -- | 62.47 | 12 | -- | -- |
| 61.5 | 0.365 | 9.48 | -- | 1.01 | -1.11 | -- | -- | 0.171 | 14.8 | 22.78 | 3031 | -- | -- |
| 124.96 | 0.522 | 9.41 | 0.78 | -- | -- | -- | -- | 0.45 | -- | -- | -- | -- | -- |
| 86.13 | 0.434 | 9.43 | -- | 0.97 | -- | -- | -- | 0.384 | 14.7 | -- | -- | -- | -- |
| 83.9 | 0.427 | 9.48 | -- | -- | -1.94 | -- | -- | 0.142 | -- | 80.84 | 13 | -- | -- |
| 141.01 | 0.554 | 9.43 | -- | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.79 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 10 |
| 3 | 51.90 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 20 |
| 7 | 52.33 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 10 |
| 8 | 52.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 19 | 52.95 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 16 |
| 25 | 53.30 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 21 |
| 41 | 53.71 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 21 |
| 43 | 53.79 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 23 |
| 51 | 54.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 20 |
| 96 | 54.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 97 | 54.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 113 | 54.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 120 | 54.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 122 | 54.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 126 | 54.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 21 |
| 131 | 54.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 134 | 55.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 136 | 55.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 170 | 55.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 174 | 55.26 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 180 | 55.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 15 |
| 199 | 55.46 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 14 |
| 212 | 55.53 | temperature | 20 | 10 | < th | dose independent | rect. | 13 | 17 |
| 224 | 55.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 238 | 55.59 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 12 |
| 239 | 55.59 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 14 |
| 242 | 55.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 244 | 55.61 | temperature | 20 | 90 | < th | dose independent | sin | 12 | NA |
| 245 | 55.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 246 | 55.61 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 16 |
| 265 | 55.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 278 | 55.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 280 | 55.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 285 | 55.68 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 369 | 55.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 371 | 55.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 406 | 55.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 416 | 55.86 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 10 |
| 478 | 55.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 512 | 55.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 569 | 56.01 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 610 | 56.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 650 | 56.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 685 | 56.16 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 686 | 56.16 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 703 | 56.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 713 | 56.19 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 729 | 56.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 10 |
| 838 | 56.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 868 | 56.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 871 | 56.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 970 | 56.43 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |