FiT-DB / Search/ Help/ Sample detail

Os07g0569600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0303) R2 : 0.919
β1 : 0.734 (0.111) R2dD : 0.00794 R2D : 0.00195
β2 : 4.15 (0.0884) R2dC : 0.535 R2C : 0.793
β3 : 2.36 (0.108) R2dE : 0.117 R2E : 0.375
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.177 (0.0647) R2dN8 : 0.00185 R2N8 : 0.00476
σ : 0.566
deviance : 147.78
__
_____
C
peak time of C : 15.2
E
wheather : precipitation
threshold : 0.3633
memory length : 183
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.07
open length of G : 20.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.87 0.562 11.8 0.741 4.14 2.41 -1.38 0.359 -0.171 15.2 0.2303 189 6.06 20.8
142.51 0.556 11.8 0.76 4.13 2.39 -1.29 -- -0.175 15.2 0.2769 183 6.05 20.8
147.98 0.567 11.8 0.754 4.2 2.39 -- -0.316 -0.168 15.2 0.02065 185 6.07 20.9
147.78 0.566 11.8 0.734 4.15 2.36 -- -- -0.177 15.2 0.3633 183 6.07 20.8
249.92 0.736 11.7 0.942 -- 5.59 -- -1.32 -0.106 -- 0.05206 637 2.58 16.2
261.58 0.758 11.8 0.61 5.3 -- -0.875 -- -0.211 15.8 -- -- -- --
263.85 0.761 11.8 0.597 5.3 -- -- -- -0.216 15.8 -- -- -- --
249.3 0.735 11.8 0.662 -- 5.55 -- -- -0.188 -- 0.4988 645 2.43 16.3
160.79 0.591 11.8 -- 4.19 2.26 -- -- -0.262 15.2 0.5 163 6.28 20.8
1812.16 1.99 11.8 0.378 -- -- -- -- -0.358 -- -- -- -- --
273.25 0.773 11.9 -- 5.29 -- -- -- -0.283 15.8 -- -- -- --
256.53 0.746 11.8 -- -- 5.01 -- -- -0.284 -- 1.467 652 2.3 16.4
1815.92 1.99 11.8 -- -- -- -- -- -0.4 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.81 radiation 1.0 270 < th dose dependent rect. 2 17
2 152.60 precipitation 0.1 270 < th dose independent rect. 6 20
3 152.60 precipitation 0.1 270 < th dose dependent rect. 6 20
6 152.98 humidity 50.0 90 > th dose dependent rect. 3 4
13 154.00 precipitation 0.1 90 < th dose independent rect. 3 4
14 154.00 precipitation 0.1 90 < th dose dependent rect. 3 4
15 154.03 wind 9.0 90 < th dose dependent rect. 3 4
16 154.04 humidity 70.0 90 > th dose independent rect. 3 4
19 154.10 radiation 30.0 90 < th dose independent rect. 3 4
20 154.12 wind 9.0 90 < th dose independent rect. 3 4
21 154.12 temperature 10.0 90 > th dose independent rect. 3 4
23 154.12 temperature 30.0 90 < th dose independent rect. 3 4
24 154.12 humidity 50.0 90 > th dose independent rect. 3 4
26 154.12 atmosphere 995.0 90 > th dose independent rect. 3 4
27 154.12 atmosphere 1015.0 90 < th dose independent rect. 3 4
29 154.12 temperature 10.0 90 > th dose independent rect. 7 20
31 154.25 wind 9.0 90 < th dose independent rect. 7 20
33 154.88 radiation 40.0 270 < th dose dependent rect. 15 15
34 155.13 radiation 1.0 270 < th dose independent rect. 2 17
43 156.05 radiation 20.0 270 < th dose dependent rect. 2 4
48 156.24 radiation 1.0 270 < th dose independent rect. 2 4
197 160.06 radiation 1.0 270 < th dose dependent rect. 2 7
214 160.54 radiation 1.0 270 < th dose independent rect. 2 7
220 160.90 radiation 1.0 270 < th dose dependent sin 2 NA
225 161.36 precipitation 0.1 270 < th dose independent rect. 21 13
226 161.36 precipitation 0.1 270 < th dose dependent rect. 21 13
228 161.73 temperature 10.0 270 > th dose dependent rect. 2 4
231 162.12 temperature 10.0 90 > th dose dependent rect. 7 20
248 163.32 temperature 10.0 90 > th dose dependent rect. 4 3
249 163.36 wind 9.0 270 < th dose independent rect. 21 13
254 163.63 temperature 10.0 270 > th dose independent rect. 10 11
255 163.63 temperature 10.0 270 > th dose independent rect. 21 13
256 163.63 atmosphere 995.0 270 > th dose independent rect. 21 13
260 163.73 humidity 50.0 270 > th dose independent rect. 21 13
270 164.58 atmosphere 995.0 90 > th dose independent rect. 7 20
279 165.03 radiation 20.0 270 < th dose independent rect. 16 14
323 166.13 radiation 1.0 270 > th dose independent sin 3 NA
327 166.41 atmosphere 1015.0 270 < th dose independent rect. 10 11
329 166.57 temperature 15.0 270 > th dose independent rect. 16 14
349 167.47 radiation 1.0 270 < th dose independent sin 2 NA
359 167.70 wind 1.0 270 > th dose independent rect. 6 19
362 167.73 humidity 50.0 270 > th dose independent rect. 16 14
385 168.84 atmosphere 995.0 90 > th dose dependent rect. 3 4
396 169.11 atmosphere 1015.0 90 < th dose independent rect. 7 20
423 169.63 wind 1.0 270 > th dose independent rect. 10 11
430 169.83 atmosphere 1015.0 90 < th dose dependent rect. 3 4
434 169.87 precipitation 0.1 270 < th dose independent rect. 6 11
435 169.87 precipitation 0.1 270 < th dose dependent rect. 6 11
442 170.03 temperature 30.0 90 < th dose dependent rect. 3 4
445 170.14 wind 9.0 90 < th dose dependent rect. 7 20
447 170.16 humidity 50.0 90 > th dose dependent rect. 17 14
464 170.57 wind 9.0 270 < th dose independent rect. 10 11
496 170.85 precipitation 0.1 10 < th dose independent rect. 8 19
497 170.85 precipitation 0.1 10 < th dose dependent rect. 8 19
502 170.93 atmosphere 995.0 270 > th dose independent rect. 17 13
510 171.09 temperature 10.0 270 > th dose independent rect. 6 11
511 171.09 atmosphere 1015.0 270 < th dose independent rect. 6 11
521 171.25 radiation 30.0 10 < th dose independent rect. 3 5
568 171.85 humidity 70.0 10 > th dose independent rect. 3 5
596 172.03 temperature 10.0 10 > th dose dependent rect. 8 19
609 172.22 wind 9.0 270 < th dose independent rect. 6 11
611 172.26 humidity 50.0 90 > th dose dependent rect. 15 16
624 172.48 wind 1.0 270 > th dose independent rect. 2 3
625 172.49 wind 9.0 270 < th dose independent rect. 17 13
634 172.64 wind 9.0 10 < th dose independent rect. 8 19
637 172.68 precipitation 0.1 270 < th dose independent rect. 10 11
638 172.68 precipitation 0.1 270 < th dose dependent rect. 10 11
676 173.29 wind 9.0 10 < th dose independent rect. 3 5
677 173.29 temperature 10.0 10 > th dose independent rect. 3 5
679 173.29 temperature 30.0 10 < th dose independent rect. 3 5
680 173.29 humidity 50.0 10 > th dose independent rect. 3 5
682 173.29 atmosphere 995.0 10 > th dose independent rect. 3 5
683 173.29 atmosphere 1015.0 10 < th dose independent rect. 3 5
684 173.29 temperature 10.0 10 > th dose independent rect. 8 19
702 173.65 precipitation 0.1 10 < th dose independent rect. 3 5
703 173.65 precipitation 0.1 10 < th dose dependent rect. 3 5
704 173.67 wind 1.0 270 > th dose independent rect. 3 1
710 173.74 wind 9.0 10 < th dose dependent rect. 3 5
773 174.82 wind 9.0 1440 < th dose independent rect. 4 4
774 174.82 temperature 10.0 1440 > th dose independent rect. 4 4
777 174.82 temperature 30.0 1440 < th dose independent rect. 4 4
781 174.82 humidity 50.0 1440 > th dose independent rect. 4 4
786 174.82 atmosphere 995.0 1440 > th dose independent rect. 4 4
787 174.82 atmosphere 1015.0 1440 < th dose independent rect. 4 4
788 174.82 temperature 10.0 1440 > th dose independent rect. 8 20
870 175.51 temperature 15.0 90 > th dose independent rect. 13 18
930 176.01 wind 1.0 270 > th dose independent rect. 1 5
968 176.34 temperature 30.0 270 < th dose independent rect. 21 13
977 176.65 radiation 1.0 90 > th dose independent rect. 7 12