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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0568800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0163) R2 : 0.000353
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0137 (0.0342) R2dN8 : 0.000456 R2N8 : 0.000353
σ : 0.306
deviance : 43.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.66 0.296 3.14 0.108 0.132 -0.0617 -0.0832 2.1 0.000989 8.31 0.6634 200 -- --
41.27 0.299 3.16 0.0617 0.122 0.196 0.0283 -- 0.00667 8.36 0.9 199 -- --
39.66 0.293 3.14 0.106 0.13 -0.0589 -- 2.11 0.00339 8.55 0.6574 195 -- --
41 0.298 3.15 0.061 0.114 0.234 -- -- 0.0275 8.56 0.6029 370 -- --
40.56 0.297 3.15 0.106 -- 0.0292 -- 2.08 0.00936 -- 0.6462 195 -- --
41.63 0.302 3.16 0.0826 0.148 -- 0.0493 -- -0.00599 8.17 -- -- -- --
41.63 0.302 3.16 0.0839 0.149 -- -- -- -0.00607 8.12 -- -- -- --
41.45 0.3 3.16 0.0329 -- 0.329 -- -- 0.0219 -- 0.4978 370 -- --
41.01 0.298 3.16 -- 0.0997 0.274 -- -- 0.0298 8.64 0.4938 370 -- --
42.84 0.306 3.17 0.0852 -- -- -- -- -0.00429 -- -- -- -- --
41.82 0.302 3.16 -- 0.149 -- -- -- -0.0154 8.08 -- -- -- --
41.47 0.3 3.16 -- -- 0.331 -- -- 0.0205 -- 0.5 370 -- --
43.04 0.306 3.17 -- -- -- -- -- -0.0137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.61 precipitation 0.1 10 > th dose independent rect. 1 1
11 29.61 precipitation 0.1 10 > th dose dependent rect. 1 1
25 30.54 wind 1.0 90 < th dose dependent rect. 24 2
30 31.66 wind 1.0 30 < th dose independent rect. 1 1
122 37.54 wind 1.0 270 < th dose dependent rect. 14 12
126 37.55 wind 1.0 270 < th dose dependent rect. 16 10
140 37.62 humidity 90.0 90 > th dose dependent rect. 24 1
153 37.91 humidity 90.0 10 > th dose dependent rect. 24 3
180 38.15 temperature 20.0 30 > th dose dependent rect. 1 1
190 38.24 wind 1.0 270 < th dose dependent rect. 9 18
226 38.52 atmosphere 1005.0 90 > th dose dependent rect. 1 1
249 38.63 wind 1.0 270 < th dose dependent sin 15 NA
259 38.67 precipitation 0.1 1440 < th dose independent rect. 24 2
261 38.67 precipitation 0.1 1440 < th dose dependent rect. 24 2
275 38.78 temperature 25.0 10 < th dose independent rect. 24 3
284 38.80 temperature 20.0 90 > th dose independent rect. 1 1
290 38.81 wind 1.0 270 < th dose independent rect. 16 9
297 38.84 atmosphere 1005.0 90 > th dose independent rect. 1 1
329 38.93 atmosphere 995.0 30 > th dose independent rect. 3 22
346 38.96 precipitation 0.1 1440 > th dose independent rect. 24 1
348 38.96 precipitation 0.1 1440 > th dose dependent rect. 24 1
366 39.01 precipitation 0.1 1440 > th dose independent rect. 22 3
369 39.01 precipitation 0.1 1440 > th dose dependent rect. 22 3
373 39.03 humidity 90.0 30 > th dose independent rect. 1 2
401 39.08 wind 7.0 1440 < th dose independent rect. 2 1
410 39.10 radiation 10.0 30 > th dose independent rect. 7 1
458 39.22 wind 9.0 30 < th dose independent rect. 3 22
460 39.22 wind 9.0 30 < th dose dependent rect. 3 22
470 39.24 temperature 10.0 90 > th dose independent rect. 1 1
473 39.24 humidity 50.0 90 > th dose independent rect. 1 1
476 39.24 atmosphere 995.0 90 > th dose independent rect. 1 1
477 39.24 atmosphere 1010.0 90 < th dose independent rect. 1 1
479 39.24 radiation 1.0 90 < th dose independent rect. 1 1
502 39.24 temperature 10.0 30 > th dose independent rect. 3 22
504 39.24 radiation 1.0 90 < th dose dependent rect. 1 1
558 39.27 humidity 80.0 10 < th dose independent rect. 7 1
586 39.33 temperature 10.0 1440 > th dose independent rect. 2 1
589 39.33 temperature 30.0 1440 < th dose independent rect. 2 1
593 39.33 humidity 50.0 1440 > th dose independent rect. 2 1
603 39.33 atmosphere 995.0 1440 > th dose independent rect. 2 1
604 39.33 radiation 1.0 1440 < th dose independent rect. 2 1
626 39.33 temperature 10.0 1440 > th dose independent rect. 3 23
630 39.33 radiation 1.0 1440 < th dose dependent rect. 2 1
655 39.34 precipitation 0.1 30 < th dose independent rect. 1 2
658 39.34 precipitation 0.1 30 < th dose dependent rect. 1 2
725 39.42 humidity 80.0 10 < th dose independent rect. 23 9
729 39.42 wind 9.0 30 < th dose dependent rect. 2 12
730 39.43 wind 1.0 10 > th dose independent rect. 2 1
732 39.43 humidity 80.0 10 < th dose independent rect. 1 7
740 39.44 radiation 10.0 10 > th dose independent rect. 16 16
744 39.44 wind 3.0 30 < th dose dependent rect. 2 11
750 39.45 humidity 90.0 90 < th dose independent rect. 2 6
751 39.45 wind 9.0 10 < th dose independent rect. 3 11
757 39.46 precipitation 0.1 720 < th dose independent rect. 14 1
758 39.46 precipitation 0.1 720 < th dose dependent rect. 14 1
762 39.47 temperature 10.0 10 > th dose independent rect. 3 11
764 39.47 atmosphere 995.0 10 > th dose independent rect. 3 11
765 39.47 atmosphere 1015.0 10 < th dose independent rect. 3 11
766 39.47 temperature 10.0 10 > th dose independent rect. 14 13
767 39.47 radiation 40.0 10 < th dose independent rect. 14 13
784 39.50 precipitation 0.1 30 < th dose independent rect. 3 22
787 39.50 precipitation 0.1 30 < th dose dependent rect. 3 22
809 39.52 wind 9.0 10 < th dose independent rect. 14 13
841 39.55 wind 1.0 270 > th dose independent rect. 17 12
845 39.56 temperature 10.0 720 > th dose independent rect. 14 1
846 39.56 atmosphere 1015.0 720 < th dose independent rect. 14 1
849 39.56 temperature 10.0 720 > th dose independent rect. 15 23
854 39.57 precipitation 0.1 720 < th dose independent rect. 14 3
865 39.57 precipitation 0.1 720 < th dose dependent rect. 14 3
873 39.58 humidity 90.0 90 < th dose dependent rect. 2 5
876 39.59 radiation 1.0 720 > th dose independent rect. 14 1
879 39.59 temperature 10.0 1440 > th dose independent rect. 3 12
882 39.59 temperature 10.0 1440 > th dose independent rect. 15 12
963 39.61 wind 9.0 720 < th dose independent rect. 14 1