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Os07g0568600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium-dependent protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0228) R2 : 0.696
β1 : -0.744 (0.0835) R2dD : 0.0564 R2D : 0.0462
β2 : 1.1 (0.0548) R2dC : 0.271 R2C : 0.267
β3 : 2.03 (0.0891) R2dE : 0.353 R2E : 0.36
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.241 (0.0488) R2dN8 : 0.0219 R2N8 : 0.0136
σ : 0.426
deviance : 83.83
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_____
C
peak time of C : 10.5
E
wheather : temperature
threshold : 30.82
memory length : 317
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.8
open length of G : 6.62

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.7 0.425 10.1 -0.724 1.1 1.97 -0.77 -0.139 -0.24 10.3 30.49 285 23 6.81
81.6 0.421 10.1 -0.719 1.09 1.99 -0.793 -- -0.243 10.2 30.27 300 23 6.62
83.86 0.427 10.1 -0.759 1.09 2.02 -- -0.0334 -0.24 10.4 30.64 315 22.8 6.67
83.83 0.426 10.1 -0.744 1.1 2.03 -- -- -0.241 10.5 30.82 317 22.8 6.62
101.57 0.469 10.1 -0.754 -- 1.89 -- -0.426 -0.282 -- 40.62 326 23.6 9.5
109.78 0.491 10.1 -0.799 1.63 -- -0.842 -- -0.34 7.54 -- -- -- --
111.75 0.495 10.1 -0.82 1.63 -- -- -- -0.339 7.53 -- -- -- --
102.01 0.47 10.1 -0.758 -- 1.91 -- -- -0.282 -- 39.81 325 23.6 9.52
98.3 0.462 10.1 -- 1.17 2.33 -- -- -0.175 10.9 30.51 347 22.4 6.72
254.58 0.746 10.1 -0.795 -- -- -- -- -0.314 -- -- -- -- --
129.45 0.532 10.1 -- 1.63 -- -- -- -0.248 7.56 -- -- -- --
116.39 0.502 10.1 -- -- 1.99 -- -- -0.182 -- 36.54 321 23.6 9.73
271.26 0.769 10.1 -- -- -- -- -- -0.225 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.03 temperature 30.0 270 < th dose dependent rect. 23 7
6 84.92 temperature 30.0 90 < th dose dependent rect. 1 8
29 88.27 temperature 10.0 270 > th dose dependent rect. 19 16
54 90.17 precipitation 0.1 270 < th dose independent rect. 16 9
55 90.17 precipitation 0.1 270 < th dose dependent rect. 16 9
62 90.59 wind 1.0 270 > th dose independent rect. 12 17
63 90.63 wind 9.0 270 < th dose independent rect. 12 17
64 90.64 temperature 25.0 270 < th dose independent rect. 23 7
65 90.67 wind 9.0 270 < th dose independent rect. 1 15
68 90.75 temperature 10.0 270 > th dose dependent rect. 17 8
71 90.83 precipitation 0.1 270 < th dose independent rect. 1 15
72 90.83 precipitation 0.1 270 < th dose dependent rect. 1 15
79 90.96 temperature 10.0 270 > th dose independent rect. 5 7
80 90.96 atmosphere 995.0 270 > th dose independent rect. 5 7
81 90.96 atmosphere 1015.0 270 < th dose independent rect. 5 7
82 90.96 temperature 10.0 270 > th dose independent rect. 12 17
83 90.99 precipitation 0.1 270 < th dose independent rect. 5 7
84 90.99 precipitation 0.1 270 < th dose dependent rect. 5 7
92 91.14 radiation 20.0 270 < th dose independent rect. 16 9
93 91.15 humidity 50.0 270 > th dose independent rect. 5 7
98 91.20 wind 9.0 270 < th dose independent rect. 5 7
100 91.23 radiation 40.0 270 < th dose dependent rect. 16 9
101 91.25 temperature 10.0 270 > th dose independent rect. 16 9
102 91.25 radiation 40.0 270 < th dose independent rect. 16 9
103 91.25 temperature 10.0 270 > th dose independent rect. 1 15
104 91.25 atmosphere 1015.0 270 < th dose independent rect. 1 15
116 91.40 wind 7.0 270 < th dose independent rect. 17 8
160 91.85 humidity 50.0 270 > th dose independent rect. 17 8
167 91.89 temperature 30.0 30 < th dose dependent rect. 3 6
168 91.91 wind 1.0 270 > th dose independent rect. 24 6
169 91.94 temperature 30.0 270 < th dose dependent rect. 3 1
171 91.96 precipitation 0.1 270 < th dose independent rect. 12 17
173 91.96 precipitation 0.1 270 < th dose dependent rect. 12 17
197 92.18 precipitation 0.1 270 < th dose independent rect. 6 18
199 92.18 precipitation 0.1 270 < th dose dependent rect. 6 18
213 92.30 atmosphere 995.0 270 > th dose independent rect. 17 8
220 92.34 wind 1.0 270 > th dose independent rect. 17 7
236 92.40 radiation 1.0 270 > th dose independent rect. 5 7
263 92.48 wind 9.0 270 < th dose dependent rect. 16 8
265 92.49 precipitation 0.1 270 < th dose independent rect. 24 6
267 92.49 precipitation 0.1 270 < th dose dependent rect. 24 6
270 92.52 wind 1.0 10 > th dose independent rect. 1 5
278 92.55 wind 1.0 270 > th dose independent rect. 5 7
288 92.66 radiation 20.0 270 < th dose dependent rect. 24 6
289 92.66 temperature 15.0 10 > th dose dependent rect. 23 15
298 92.71 wind 9.0 270 < th dose independent rect. 24 6
299 92.71 temperature 10.0 270 > th dose independent rect. 24 6
302 92.71 humidity 50.0 270 > th dose independent rect. 24 6
305 92.71 atmosphere 995.0 270 > th dose independent rect. 24 6
306 92.71 radiation 20.0 270 < th dose independent rect. 24 6
310 92.71 temperature 10.0 270 > th dose independent rect. 6 18
311 92.72 atmosphere 1015.0 270 < th dose independent rect. 24 6
314 92.73 atmosphere 995.0 270 > th dose independent rect. 12 17
318 92.74 atmosphere 995.0 270 > th dose independent rect. 1 15
325 92.78 atmosphere 1015.0 270 < th dose independent rect. 6 18
344 92.93 atmosphere 1015.0 270 < th dose independent rect. 17 7
345 92.93 radiation 1.0 10 > th dose independent rect. 6 8
348 92.94 wind 1.0 270 > th dose independent rect. 11 8
354 92.98 wind 9.0 270 < th dose independent rect. 11 8
381 93.06 temperature 15.0 10 > th dose independent rect. 14 16
390 93.11 radiation 1.0 270 > th dose independent rect. 17 20
391 93.12 wind 9.0 10 < th dose independent rect. 14 16
395 93.15 temperature 20.0 270 > th dose independent rect. 19 17
399 93.17 radiation 1.0 270 < th dose independent rect. 24 16
403 93.18 temperature 10.0 10 > th dose independent rect. 6 8
405 93.18 atmosphere 995.0 10 > th dose independent rect. 6 8
406 93.18 atmosphere 1015.0 10 < th dose independent rect. 6 8
414 93.21 precipitation 0.1 10 < th dose independent rect. 6 8
416 93.21 radiation 40.0 10 < th dose independent rect. 14 16
417 93.21 precipitation 0.1 10 < th dose dependent rect. 6 8
428 93.25 radiation 1.0 270 < th dose dependent rect. 24 16
443 93.28 wind 1.0 270 > th dose independent rect. 24 17
459 93.36 atmosphere 995.0 270 > th dose independent rect. 6 18
465 93.38 precipitation 0.1 270 < th dose independent rect. 19 16
471 93.38 precipitation 0.1 270 < th dose dependent rect. 19 16
480 93.40 precipitation 0.1 10 < th dose independent rect. 9 16
485 93.40 precipitation 0.1 10 < th dose dependent rect. 9 16
488 93.41 atmosphere 995.0 10 > th dose independent rect. 9 16
499 93.44 precipitation 0.1 270 < th dose independent rect. 5 20
501 93.44 precipitation 0.1 270 < th dose dependent rect. 5 20
510 93.47 wind 9.0 270 < th dose independent rect. 6 18
514 93.48 wind 7.0 270 < th dose independent rect. 18 17
522 93.51 radiation 40.0 90 < th dose dependent rect. 1 8
530 93.55 temperature 10.0 1440 > th dose independent rect. 7 8
533 93.55 temperature 10.0 1440 > th dose independent rect. 15 16
540 93.56 humidity 50.0 270 > th dose independent rect. 1 15
579 93.66 temperature 10.0 270 > th dose independent rect. 11 8
580 93.66 atmosphere 1015.0 270 < th dose independent rect. 11 8
582 93.66 temperature 10.0 270 > th dose independent rect. 19 16
583 93.66 atmosphere 995.0 270 > th dose independent rect. 19 16
591 93.69 humidity 50.0 270 > th dose independent rect. 19 16
609 93.71 wind 1.0 270 > th dose independent rect. 12 5
655 93.80 wind 9.0 10 < th dose independent rect. 6 8
663 93.81 radiation 1.0 1440 < th dose dependent rect. 19 7
667 93.82 precipitation 0.1 270 < th dose independent rect. 1 4
670 93.82 precipitation 0.1 270 < th dose dependent rect. 1 4
686 93.88 temperature 30.0 90 < th dose independent rect. 17 8
702 93.93 precipitation 0.1 270 < th dose independent rect. 17 19
704 93.93 precipitation 0.1 270 < th dose dependent rect. 17 19
707 93.94 precipitation 0.1 270 < th dose independent rect. 11 8
709 93.94 precipitation 0.1 270 < th dose dependent rect. 11 8
713 93.96 wind 1.0 10 > th dose independent rect. 14 16
718 93.98 wind 9.0 270 < th dose independent rect. 1 4
719 93.98 temperature 10.0 270 > th dose independent rect. 1 4
722 93.98 humidity 50.0 270 > th dose independent rect. 1 4
725 93.98 atmosphere 995.0 270 > th dose independent rect. 1 4
726 93.98 atmosphere 1010.0 270 < th dose independent rect. 1 4
728 93.98 radiation 20.0 270 < th dose independent rect. 1 4
733 93.98 temperature 10.0 270 > th dose independent rect. 5 20
736 93.98 radiation 30.0 270 < th dose dependent rect. 1 4
772 94.00 atmosphere 1015.0 10 < th dose independent rect. 9 16
777 94.00 atmosphere 1015.0 270 < th dose dependent rect. 24 6
794 94.03 radiation 40.0 14400 < th dose dependent rect. 19 7
819 94.10 wind 9.0 10 < th dose independent rect. 1 8
820 94.10 temperature 10.0 10 > th dose independent rect. 1 8
822 94.10 temperature 30.0 10 < th dose independent rect. 1 8
823 94.10 humidity 50.0 10 > th dose independent rect. 1 8
825 94.10 atmosphere 995.0 10 > th dose independent rect. 1 8
826 94.10 atmosphere 1015.0 10 < th dose independent rect. 1 8
827 94.10 temperature 10.0 10 > th dose independent rect. 9 16
839 94.13 wind 9.0 270 < th dose independent rect. 12 5
868 94.17 precipitation 0.1 30 < th dose independent rect. 1 8
869 94.17 precipitation 0.1 30 < th dose dependent rect. 1 8
875 94.19 temperature 10.0 1440 > th dose independent rect. 2 8
878 94.19 atmosphere 995.0 1440 > th dose independent rect. 2 8
879 94.19 radiation 40.0 30 < th dose independent rect. 1 8
881 94.19 temperature 10.0 1440 > th dose independent rect. 10 16
894 94.20 temperature 20.0 90 > th dose independent rect. 22 15
938 94.26 temperature 10.0 1440 > th dose independent rect. 19 7
941 94.26 temperature 30.0 1440 < th dose independent rect. 19 7
945 94.26 humidity 50.0 1440 > th dose independent rect. 19 7
947 94.26 atmosphere 995.0 1440 > th dose independent rect. 19 7
948 94.26 radiation 1.0 1440 < th dose independent rect. 19 7
968 94.26 temperature 10.0 1440 > th dose independent rect. 2 17
988 94.28 wind 1.0 10 > th dose independent rect. 6 8
990 94.28 radiation 1.0 270 < th dose dependent sin 5 NA
994 94.29 wind 1.0 270 > th dose independent rect. 6 18