Os07g0568400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TB2/DP1 and HVA22 related protein family protein.
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Os07g0568400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TB2/DP1 and HVA22 related protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7.04 | 0.125 | 11.3 | 0.151 | 0.183 | -0.259 | -0.0399 | -0.056 | 0.0439 | 7.23 | 24 | 1464 | -- | -- |
| 7.05 | 0.124 | 11.3 | 0.139 | 0.18 | -0.261 | -0.0391 | -- | 0.0452 | 7.28 | 23.9 | 1459 | -- | -- |
| 6.79 | 0.121 | 11.3 | 0.184 | 0.192 | -0.307 | -- | -0.21 | 0.0664 | 7.34 | 22.1 | 1398 | -- | -- |
| 6.89 | 0.122 | 11.3 | 0.135 | 0.187 | -0.289 | -- | -- | 0.0524 | 7.37 | 22.19 | 1330 | -- | -- |
| 8.6 | 0.137 | 11.3 | 0.212 | -- | -0.304 | -- | -0.253 | 0.0725 | -- | 22.1 | 1409 | -- | -- |
| 9.99 | 0.148 | 11.3 | 0.239 | 0.192 | -- | -0.059 | -- | 0.147 | 6.91 | -- | -- | -- | -- |
| 10 | 0.148 | 11.3 | 0.238 | 0.191 | -- | -- | -- | 0.147 | 7.02 | -- | -- | -- | -- |
| 8.73 | 0.138 | 11.3 | 0.137 | -- | -0.29 | -- | -- | 0.0524 | -- | 22.3 | 1401 | -- | -- |
| 7.19 | 0.125 | 11.3 | -- | 0.196 | -0.343 | -- | -- | 0.0191 | 7.66 | 21.8 | 2597 | -- | -- |
| 11.93 | 0.161 | 11.3 | 0.241 | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
| 11.49 | 0.159 | 11.3 | -- | 0.194 | -- | -- | -- | 0.121 | 6.94 | -- | -- | -- | -- |
| 9.03 | 0.14 | 11.3 | -- | -- | -0.351 | -- | -- | 0.0268 | -- | 21.79 | 2896 | -- | -- |
| 13.47 | 0.171 | 11.3 | -- | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 6.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 17 | 6.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 55 | 6.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 66 | 6.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 146 | 6.86 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 186 | 6.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 217 | 6.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 242 | 6.90 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 393 | 6.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 419 | 6.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 443 | 6.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 480 | 6.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 565 | 7.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 567 | 7.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 780 | 7.07 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 813 | 7.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 815 | 7.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 819 | 7.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 886 | 7.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 961 | 7.11 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |