Os07g0568100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nodulation receptor kinase precursor (EC 2.7.1.-) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK).
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Os07g0568100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nodulation receptor kinase precursor (EC 2.7.1.-) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.35 | 0.377 | 6.87 | -0.159 | 0.467 | -1.08 | 0.988 | 2.81 | 0.132 | 1.85 | 26.8 | 5582 | -- | -- |
| 67.9 | 0.384 | 6.93 | -0.8 | 0.474 | -0.913 | 1.01 | -- | 0.16 | 1.34 | 23.5 | 9405 | -- | -- |
| 67.89 | 0.384 | 6.87 | -0.11 | 0.478 | -1.11 | -- | 3.14 | 0.145 | 1.83 | 26.84 | 5492 | -- | -- |
| 70.61 | 0.391 | 6.95 | -0.986 | 0.435 | -0.832 | -- | -- | 0.083 | 1.75 | 26.5 | 7650 | -- | -- |
| 78.26 | 0.412 | 6.87 | -0.138 | -- | -1.02 | -- | 2.72 | 0.176 | -- | 27 | 6093 | -- | -- |
| 93.58 | 0.454 | 7.02 | -1.33 | 0.412 | -- | 0.916 | -- | -0.246 | 1.89 | -- | -- | -- | -- |
| 96.76 | 0.461 | 7.02 | -1.36 | 0.417 | -- | -- | -- | -0.252 | 2.2 | -- | -- | -- | -- |
| 81.97 | 0.422 | 6.95 | -0.959 | -- | -0.82 | -- | -- | 0.0664 | -- | 26.6 | 7542 | -- | -- |
| 76.97 | 0.409 | 6.91 | -- | 0.483 | -1.25 | -- | -- | 0.256 | 2.03 | 21.5 | 22553 | -- | -- |
| 107.14 | 0.484 | 7.02 | -1.34 | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
| 145.33 | 0.564 | 6.99 | -- | 0.391 | -- | -- | -- | -0.1 | 2.13 | -- | -- | -- | -- |
| 88.76 | 0.439 | 6.9 | -- | -- | -1.24 | -- | -- | 0.269 | -- | 21.38 | 23287 | -- | -- |
| 154.5 | 0.58 | 6.98 | -- | -- | -- | -- | -- | -0.0929 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.35 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 2 | 55.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 3 | 55.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 7 | 55.53 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 8 | 55.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 16 | 55.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 25 | 56.06 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 27 | 56.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 43 | 56.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 48 | 56.35 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 56 | 56.49 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 72 | 56.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 78 | 56.69 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 90 | 56.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 104 | 56.97 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 18 |
| 109 | 57.00 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 116 | 57.09 | humidity | 80 | 43200 | > th | dose dependent | sin | 16 | NA |
| 117 | 57.13 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 20 |
| 121 | 57.15 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 16 |
| 122 | 57.16 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 180 | 57.68 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 255 | 58.38 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 257 | 58.39 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 302 | 58.52 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 353 | 58.82 | humidity | 90 | 43200 | > th | dose dependent | sin | 13 | NA |
| 355 | 58.83 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 356 | 58.83 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 369 | 58.88 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 380 | 58.89 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 457 | 59.25 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 480 | 59.38 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 508 | 59.46 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 513 | 59.48 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 572 | 59.61 | radiation | 40 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 576 | 59.62 | radiation | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 594 | 59.74 | radiation | 10 | 43200 | < th | dose independent | sin | 10 | NA |
| 602 | 59.79 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 615 | 59.85 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 622 | 59.87 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 632 | 59.88 | radiation | 30 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 704 | 60.04 | radiation | 40 | 43200 | > th | dose dependent | sin | 11 | NA |
| 737 | 60.13 | radiation | 40 | 43200 | < th | dose independent | sin | 11 | NA |
| 738 | 60.13 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 740 | 60.14 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 809 | 60.33 | radiation | 40 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 812 | 60.34 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 813 | 60.34 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 814 | 60.34 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 828 | 60.35 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 905 | 60.56 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 969 | 60.74 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 971 | 60.75 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 990 | 60.84 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 2 |