Os07g0567400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c region domain containing protein.
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Os07g0567400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.16 | 0.644 | 10.9 | -2.79 | 0.767 | 2.06 | -0.8 | -3.68 | -1.9 | 19.9 | 24.82 | 1239 | -- | -- |
| 194.45 | 0.649 | 10.8 | -1.91 | 0.67 | 1.9 | -0.914 | -- | -1.7 | 19.5 | 24.59 | 1156 | -- | -- |
| 189.96 | 0.642 | 10.9 | -2.79 | 0.779 | 2.06 | -- | -3.73 | -1.91 | 20.1 | 24.77 | 1259 | -- | -- |
| 195.37 | 0.651 | 10.8 | -1.81 | 0.751 | 1.68 | -- | -- | -1.64 | 20 | 25.01 | 1224 | -- | -- |
| 202.57 | 0.663 | 10.9 | -2.79 | -- | 2.44 | -- | -4.02 | -2.04 | -- | 23.24 | 915 | -- | -- |
| 292.96 | 0.802 | 10.8 | -1.31 | 0.886 | -- | -0.537 | -- | -1.45 | 21.3 | -- | -- | -- | -- |
| 293.96 | 0.803 | 10.8 | -1.29 | 0.887 | -- | -- | -- | -1.45 | 21.4 | -- | -- | -- | -- |
| 209.86 | 0.675 | 10.8 | -1.85 | -- | 2.13 | -- | -- | -1.71 | -- | 24.21 | 928 | -- | -- |
| 275.96 | 0.774 | 10.8 | -- | 0.805 | 1.27 | -- | -- | -1.37 | 20.4 | 25.43 | 1236 | -- | -- |
| 340.02 | 0.862 | 10.7 | -1.29 | -- | -- | -- | -- | -1.46 | -- | -- | -- | -- | -- |
| 338.04 | 0.86 | 10.7 | -- | 0.886 | -- | -- | -- | -1.31 | 21.3 | -- | -- | -- | -- |
| 292.93 | 0.797 | 10.7 | -- | -- | 1.72 | -- | -- | -1.41 | -- | 25 | 914 | -- | -- |
| 383.78 | 0.914 | 10.7 | -- | -- | -- | -- | -- | -1.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 2 | 176.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 3 | 176.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 177.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 5 | 177.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 6 | 177.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 8 | 177.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 22 | 179.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 40 | 180.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 16 |
| 42 | 180.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 19 |
| 53 | 180.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 92 | 181.13 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 102 | 181.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 104 | 181.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 105 | 181.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 12 |
| 122 | 181.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 123 | 181.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 133 | 181.69 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |
| 196 | 182.95 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 243 | 183.56 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 255 | 183.66 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 18 | NA |
| 256 | 183.66 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 301 | 185.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 347 | 185.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 364 | 186.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 21 |
| 379 | 187.12 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 386 | 187.20 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 413 | 187.56 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 437 | 187.83 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 482 | 188.38 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 495 | 188.48 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 525 | 188.67 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 527 | 188.68 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 562 | 189.02 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 606 | 189.57 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 706 | 190.59 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 715 | 190.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 717 | 190.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 729 | 190.75 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 21 |
| 744 | 190.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 758 | 190.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 760 | 190.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 782 | 191.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 783 | 191.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 794 | 191.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 811 | 191.26 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 855 | 191.78 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 858 | 191.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 879 | 192.22 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 889 | 192.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 891 | 192.39 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 901 | 192.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 902 | 192.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 909 | 192.62 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 938 | 193.38 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 954 | 193.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 956 | 193.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 960 | 193.64 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 2 |