Os07g0567000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exostosin-like family protein.
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Os07g0567000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exostosin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.08 | 0.305 | 9.89 | 0.895 | 0.84 | -0.46 | -0.601 | 2.56 | 0.152 | 6.84 | 21.84 | 3134 | -- | -- |
| 52.94 | 0.339 | 10 | 0.189 | 0.846 | -0.56 | -0.679 | -- | -0.0985 | 7.08 | 19.4 | 3327 | -- | -- |
| 41.12 | 0.299 | 9.92 | 0.877 | 0.838 | -0.509 | -- | 2.54 | 0.152 | 6.85 | 22.29 | 2030 | -- | -- |
| 47.8 | 0.322 | 9.97 | 0.663 | 0.874 | -1.26 | -- | -- | 0.0545 | 6.88 | 18.4 | 9641 | -- | -- |
| 75.96 | 0.406 | 9.93 | 0.882 | -- | -0.568 | -- | 2.46 | 0.181 | -- | 22.28 | 1991 | -- | -- |
| 65.41 | 0.379 | 10 | -0.186 | 0.841 | -- | -0.578 | -- | -0.246 | 6.96 | -- | -- | -- | -- |
| 66.27 | 0.381 | 10 | -0.196 | 0.839 | -- | -- | -- | -0.244 | 7 | -- | -- | -- | -- |
| 80.17 | 0.417 | 9.99 | 0.521 | -- | -1.01 | -- | -- | 0.00385 | -- | 12.7 | 26718 | -- | -- |
| 51.8 | 0.335 | 10 | -- | 0.833 | -1.01 | -- | -- | -0.132 | 6.89 | 17 | 7784 | -- | -- |
| 103.25 | 0.475 | 10.1 | -0.179 | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
| 67.29 | 0.384 | 10 | -- | 0.836 | -- | -- | -- | -0.223 | 7.02 | -- | -- | -- | -- |
| 88.41 | 0.438 | 10 | -- | -- | -0.995 | -- | -- | -0.104 | -- | 17.09 | 6375 | -- | -- |
| 104.1 | 0.476 | 10.1 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.05 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 11 | 38.62 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 12 | 38.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 18 | 39.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 23 | 39.23 | humidity | 90 | 14400 | > th | dose dependent | sin | 8 | NA |
| 24 | 39.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 13 |
| 45 | 39.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 70 | 39.46 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 73 | 39.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 94 | 39.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 100 | 39.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 101 | 39.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 103 | 39.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 118 | 39.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 124 | 39.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 128 | 39.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 184 | 39.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 232 | 40.19 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 234 | 40.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 272 | 40.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 285 | 40.44 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 302 | 40.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 308 | 40.55 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 317 | 40.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 326 | 40.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 340 | 40.63 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 349 | 40.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 415 | 40.88 | radiation | 30 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 450 | 40.95 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 480 | 41.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 493 | 41.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 502 | 41.10 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 513 | 41.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 516 | 41.12 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 517 | 41.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 518 | 41.13 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 522 | 41.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 533 | 41.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 543 | 41.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 545 | 41.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 566 | 41.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 567 | 41.19 | radiation | 30 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 569 | 41.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 596 | 41.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 608 | 41.26 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 615 | 41.27 | radiation | 30 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 616 | 41.27 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 646 | 41.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 648 | 41.34 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 660 | 41.35 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 662 | 41.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 672 | 41.36 | radiation | 30 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 678 | 41.37 | radiation | 30 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 681 | 41.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 691 | 41.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 722 | 41.42 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 726 | 41.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 738 | 41.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 774 | 41.47 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 825 | 41.55 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 853 | 41.59 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 867 | 41.62 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 868 | 41.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 874 | 41.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 878 | 41.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 880 | 41.63 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 881 | 41.63 | radiation | 10 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 890 | 41.64 | radiation | 10 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 891 | 41.64 | radiation | 10 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 904 | 41.65 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 906 | 41.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 970 | 41.70 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 988 | 41.72 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 997 | 41.73 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |