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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0566800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Toll-Interleukin receptor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0269) R2 : 0.262
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.48 (0.509) R2dE : 0.263 R2E : 0.262
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0181 (0.0567) R2dN8 : 0.000212 R2N8 : -0.000174
σ : 0.506
deviance : 117.88
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 31.89
memory length : 172
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.5
open length of G : 0.0301

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.41 0.545 2.97 -0.337 0.0717 9.38 0.0296 -58.4 0.0288 2.74 30.39 103 10 1.2
136.3 0.544 2.85 0.203 0.16 8.91 -0.153 -- 0.144 2.13 32.31 114 10.3 0.666
122.73 0.516 2.95 -0.238 0.00571 10.5 -- -59.5 0.16 21.4 31.37 144 10.5 0.0154
117.68 0.505 2.91 0.0676 0.0521 6.8 -- -- 0.045 0.267 32.79 98 10.3 0.45
117.66 0.505 2.93 -0.039 -- 11.8 -- -57 0.0282 -- 31.89 153 10.5 0.0168
159.41 0.592 2.92 0.108 0.0448 -- -0.00468 -- 0.0106 6.26 -- -- -- --
159.41 0.591 2.92 0.108 0.0448 -- -- -- 0.0106 6.29 -- -- -- --
117.66 0.505 2.91 0.0932 -- 6.46 -- -- 0.0303 -- 31.9 171 10.5 0.0333
117.76 0.505 2.91 -- 0.054 6.51 -- -- 0.0202 0.0821 32.78 93 10.3 0.45
159.52 0.59 2.92 0.109 -- -- -- -- 0.0116 -- -- -- -- --
159.72 0.591 2.92 -- 0.0463 -- -- -- -0.00142 6.17 -- -- -- --
117.88 0.506 2.92 -- -- 6.48 -- -- 0.0181 -- 31.89 172 10.5 0.0301
159.83 0.59 2.92 -- -- -- -- -- -0.000537 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.09 temperature 30.0 90 > th dose dependent rect. 10 1
2 142.27 temperature 30.0 90 > th dose independent rect. 10 1
3 143.41 temperature 30.0 90 > th dose dependent rect. 18 18
5 144.87 temperature 30.0 10 > th dose dependent rect. 12 1
82 148.40 temperature 30.0 90 > th dose dependent sin 8 NA
98 148.84 humidity 70.0 10 < th dose dependent rect. 19 13
102 149.22 temperature 30.0 270 > th dose independent rect. 18 17
187 151.27 temperature 30.0 10 > th dose dependent sin 7 NA
189 151.49 radiation 30.0 4320 < th dose dependent rect. 23 1
191 151.54 wind 9.0 1440 < th dose independent rect. 23 1
192 151.54 temperature 10.0 1440 > th dose independent rect. 23 1
195 151.54 temperature 30.0 1440 < th dose independent rect. 23 1
199 151.54 humidity 50.0 1440 > th dose independent rect. 23 1
209 151.54 atmosphere 995.0 1440 > th dose independent rect. 23 1
210 151.54 radiation 1.0 1440 < th dose independent rect. 23 1
230 151.54 temperature 10.0 1440 > th dose independent rect. 24 23
233 151.54 radiation 1.0 1440 < th dose dependent rect. 23 1
241 151.65 temperature 25.0 30 > th dose independent rect. 22 1
245 151.70 humidity 90.0 30 < th dose independent rect. 22 1
246 151.70 atmosphere 1005.0 30 > th dose dependent rect. 22 1
247 151.74 atmosphere 1005.0 30 > th dose independent rect. 22 1
248 151.75 temperature 20.0 30 > th dose dependent rect. 22 1
257 151.85 precipitation 0.1 30 < th dose independent rect. 22 1
258 151.85 precipitation 0.1 30 < th dose dependent rect. 22 1
260 151.86 humidity 80.0 30 > th dose independent rect. 22 1
261 151.86 radiation 40.0 43200 < th dose dependent rect. 23 1
264 151.88 wind 3.0 30 < th dose independent rect. 22 1
265 151.89 humidity 90.0 30 < th dose dependent rect. 22 1
266 151.92 wind 1.0 30 > th dose independent rect. 22 1
270 151.92 temperature 10.0 30 > th dose independent rect. 22 1
272 151.92 temperature 30.0 30 < th dose independent rect. 22 1
273 151.92 humidity 50.0 30 > th dose independent rect. 22 1
277 151.92 atmosphere 1010.0 30 < th dose independent rect. 22 1
279 151.92 radiation 1.0 30 < th dose independent rect. 22 1
284 151.92 temperature 10.0 30 > th dose independent rect. 23 23
285 151.92 wind 9.0 30 < th dose dependent rect. 22 1
286 151.92 radiation 1.0 30 < th dose dependent rect. 22 1
293 151.98 temperature 30.0 10 > th dose independent rect. 10 2
294 151.98 humidity 50.0 30 > th dose dependent rect. 22 1
297 152.03 wind 1.0 30 > th dose dependent rect. 22 1
308 152.24 radiation 30.0 270 > th dose independent rect. 7 1
325 152.25 atmosphere 1015.0 30 < th dose dependent rect. 22 1
328 152.31 humidity 70.0 10 < th dose dependent rect. 19 1
341 152.34 temperature 30.0 30 < th dose dependent rect. 22 1
347 152.53 humidity 70.0 10 < th dose independent rect. 19 13
349 152.55 wind 9.0 10 < th dose independent rect. 23 23
357 152.74 temperature 30.0 270 < th dose independent sin 9 NA
359 152.78 temperature 30.0 270 > th dose independent sin 9 NA
368 152.94 wind 9.0 90 > th dose dependent rect. 10 1
403 153.15 atmosphere 1015.0 720 < th dose independent rect. 3 8
420 153.31 wind 7.0 10 > th dose dependent rect. 11 1
445 153.39 wind 7.0 90 > th dose independent rect. 10 1
448 153.41 wind 7.0 10 > th dose independent rect. 11 1
476 153.55 humidity 70.0 90 < th dose dependent rect. 18 14
489 153.70 wind 3.0 90 > th dose dependent rect. 10 1
490 153.71 wind 3.0 90 > th dose independent rect. 10 1
498 153.79 temperature 15.0 720 > th dose independent rect. 3 8
503 153.84 precipitation 0.1 720 < th dose independent rect. 23 16
504 153.84 precipitation 0.1 720 < th dose dependent rect. 23 16
540 153.97 atmosphere 1005.0 10 > th dose dependent rect. 2 2
548 154.04 precipitation 0.1 720 < th dose independent rect. 3 8
549 154.04 precipitation 0.1 720 < th dose dependent rect. 3 8
580 154.12 radiation 40.0 270 > th dose dependent rect. 10 1
602 154.23 wind 5.0 720 > th dose independent rect. 4 3
608 154.28 wind 5.0 720 > th dose dependent rect. 4 1
610 154.31 temperature 30.0 720 < th dose independent rect. 3 8
615 154.32 wind 5.0 720 > th dose dependent rect. 4 3
628 154.40 wind 9.0 720 < th dose independent rect. 3 8
646 154.49 wind 9.0 30 < th dose independent rect. 3 23
669 154.57 precipitation 0.1 1440 < th dose independent rect. 15 1
670 154.57 precipitation 0.1 1440 < th dose dependent rect. 15 1
710 154.60 atmosphere 995.0 30 > th dose independent rect. 23 23
788 154.70 precipitation 0.1 1440 > th dose independent rect. 15 1
792 154.70 precipitation 0.1 1440 > th dose dependent rect. 15 1
810 154.71 atmosphere 1015.0 720 < th dose independent rect. 1 18
811 154.72 temperature 25.0 90 > th dose dependent rect. 1 1
826 154.74 wind 9.0 90 > th dose dependent rect. 18 17
828 154.75 temperature 20.0 90 < th dose independent rect. 2 2
841 154.79 wind 9.0 10 > th dose independent rect. 11 5
848 154.82 temperature 15.0 720 > th dose independent rect. 7 6
860 154.84 wind 1.0 90 > th dose dependent rect. 9 3
874 154.86 temperature 30.0 30 < th dose independent rect. 23 23
899 154.92 temperature 15.0 720 > th dose independent rect. 23 16
925 154.98 temperature 10.0 90 > th dose dependent rect. 9 14
976 155.07 wind 7.0 10 > th dose dependent sin 4 NA
998 155.13 wind 9.0 90 > th dose independent sin 7 NA