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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0566500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAC domain protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.6 (0.0569) R2 : 0.779
β1 : 3.57 (0.227) R2dD : 0.19 R2D : 0.419
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.5 (0.261) R2dE : 0.19 R2E : 0.345
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14.1 (1.08) R2dD*E : 0.12 R2D*E : 0.22
γ1 : 0.574 (0.114) R2dN8 : 0.0188 R2N8 : -0.0259
σ : 0.933
deviance : 401.15
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.9749
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 11.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
399.85 0.94 4.6 3.65 0.12 4.51 -0.537 13.9 0.542 10.2 0.97 4321 17.9 11.3
477 1.02 4.66 4.91 0.316 4.14 -0.646 -- 0.964 10.4 0.9315 4328 17.6 12
400.68 0.932 4.6 3.63 0.158 4.54 -- 14 0.54 10.3 0.9732 4322 17.9 11.3
464.93 1 4.68 5.57 0.268 3.72 -- -- 1.09 10.5 0.8503 4325 17.7 12
401.15 0.933 4.6 3.57 -- 4.5 -- 14.1 0.574 -- 0.9749 4321 17.9 11.3
754.07 1.29 4.8 6.35 0.204 -- -0.182 -- 0.847 13.6 -- -- -- --
754.14 1.29 4.8 6.34 0.209 -- -- -- 0.846 14.3 -- -- -- --
464.57 1 4.68 5.56 -- 3.67 -- -- 1.16 -- 0.85 4316 17.7 12
860.31 1.37 4.61 -- 0.3 5.53 -- -- 0.767 9.59 1.853 4321 17.5 11.9
756.73 1.29 4.8 6.33 -- -- -- -- 0.841 -- -- -- -- --
1814.57 1.99 4.96 -- 0.0933 -- -- -- 0.14 12.9 -- -- -- --
806.95 1.32 4.85 -- -- 6.47 -- -- 0.65 -- 1.857 4322 17.5 11.8
1815.12 1.99 4.96 -- -- -- -- -- 0.139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 390.65 radiation 40.0 14400 < th dose dependent rect. 18 3
3 392.06 radiation 40.0 14400 < th dose dependent rect. 18 5
20 396.19 radiation 1.0 14400 < th dose independent rect. 18 11
28 396.94 radiation 10.0 14400 < th dose dependent rect. 18 11
41 397.57 radiation 1.0 14400 > th dose independent rect. 18 11
44 397.71 radiation 1.0 14400 < th dose independent rect. 18 3
45 397.78 radiation 1.0 14400 < th dose independent rect. 18 5
57 400.04 radiation 1.0 14400 > th dose independent rect. 18 1
67 402.91 wind 3.0 43200 < th dose independent rect. 3 7
68 403.71 wind 3.0 43200 > th dose independent rect. 3 7
69 404.24 wind 3.0 43200 < th dose independent rect. 3 1
75 405.72 wind 3.0 43200 < th dose independent rect. 7 3
91 407.34 wind 3.0 43200 > th dose independent rect. 3 10
92 407.44 wind 3.0 43200 > th dose dependent rect. 6 1
99 407.76 wind 3.0 43200 > th dose independent rect. 7 3
111 409.42 wind 3.0 43200 > th dose independent rect. 3 1
113 409.73 wind 5.0 43200 < th dose dependent rect. 8 2
130 411.15 wind 3.0 43200 < th dose dependent rect. 1 3
140 412.92 wind 1.0 43200 > th dose dependent rect. 6 7
141 412.93 wind 7.0 43200 < th dose dependent rect. 6 7
146 413.14 wind 1.0 43200 > th dose dependent rect. 3 11
159 414.52 wind 9.0 43200 < th dose dependent rect. 3 11
172 415.33 wind 3.0 43200 < th dose dependent rect. 3 1
178 415.50 wind 1.0 43200 > th dose dependent rect. 6 4
218 417.56 wind 1.0 43200 > th dose dependent rect. 9 1
268 419.47 wind 9.0 43200 < th dose dependent rect. 6 4
271 419.57 wind 1.0 43200 > th dose dependent sin 4 NA
275 419.69 wind 3.0 43200 > th dose independent rect. 3 4
292 420.54 wind 9.0 43200 < th dose dependent sin 4 NA
345 422.62 radiation 30.0 14400 > th dose independent rect. 7 1
375 423.28 humidity 80.0 43200 > th dose independent rect. 23 1
393 423.97 humidity 90.0 43200 > th dose independent rect. 9 1
485 428.01 wind 3.0 43200 > th dose independent sin 6 NA
488 428.14 wind 5.0 43200 < th dose independent rect. 5 11
533 429.85 precipitation 0.1 43200 > th dose dependent rect. 19 2
561 431.17 humidity 90.0 14400 < th dose independent rect. 17 10
570 431.32 wind 3.0 43200 > th dose dependent rect. 20 20
582 431.68 wind 1.0 43200 > th dose dependent rect. 20 18
586 431.95 wind 3.0 43200 < th dose independent sin 6 NA
588 431.99 wind 3.0 43200 < th dose independent rect. 21 13
611 432.51 wind 9.0 43200 < th dose dependent rect. 20 18
623 433.01 radiation 20.0 14400 < th dose independent rect. 16 15
627 433.10 humidity 90.0 43200 < th dose independent rect. 9 1
637 433.38 precipitation 0.1 43200 > th dose dependent rect. 16 2
646 433.49 precipitation 0.1 43200 > th dose dependent rect. 17 4
647 433.50 humidity 80.0 43200 < th dose independent rect. 22 2
650 433.60 wind 3.0 43200 > th dose independent rect. 21 13
692 434.63 precipitation 0.1 43200 < th dose independent rect. 16 2
694 434.63 precipitation 0.1 43200 < th dose dependent rect. 16 2
713 434.94 precipitation 0.1 43200 > th dose independent rect. 17 1
714 434.94 radiation 1.0 14400 > th dose dependent rect. 18 1
751 435.42 humidity 90.0 43200 < th dose independent rect. 17 3
775 435.82 humidity 80.0 43200 < th dose independent rect. 22 9
785 436.07 humidity 80.0 43200 < th dose independent rect. 22 7
819 436.74 radiation 10.0 14400 > th dose dependent rect. 17 13
823 436.86 humidity 80.0 43200 > th dose dependent rect. 10 1
864 437.59 radiation 1.0 43200 < th dose dependent rect. 4 1
876 437.81 wind 5.0 43200 < th dose independent sin 2 NA
905 438.46 humidity 80.0 43200 > th dose dependent rect. 17 1
908 438.53 humidity 80.0 43200 > th dose independent rect. 3 1
971 439.81 humidity 90.0 43200 > th dose independent rect. 21 2