Os07g0566200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os07g0566200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.27 | 0.33 | 10.9 | 1.91 | 0.271 | -1.8 | 0.0735 | 1.76 | 0.862 | 4.98 | 16.5 | 259 | -- | -- |
| 51.15 | 0.333 | 10.9 | 1.64 | 0.289 | -1.76 | -0.391 | -- | 0.792 | 5.18 | 16.11 | 249 | -- | -- |
| 49.27 | 0.327 | 10.9 | 1.91 | 0.269 | -1.78 | -- | 1.73 | 0.863 | 4.85 | 16.76 | 268 | -- | -- |
| 51.46 | 0.334 | 10.9 | 1.62 | 0.278 | -1.83 | -- | -- | 0.78 | 5.05 | 15.4 | 252 | -- | -- |
| 51.91 | 0.336 | 10.9 | 2 | -- | -1.98 | -- | 1.81 | 0.905 | -- | 17.21 | 265 | -- | -- |
| 89.98 | 0.445 | 11 | 1.21 | 0.827 | -- | 0.00223 | -- | 0.508 | 4.74 | -- | -- | -- | -- |
| 89.98 | 0.444 | 11 | 1.21 | 0.827 | -- | -- | -- | 0.508 | 4.74 | -- | -- | -- | -- |
| 54.22 | 0.343 | 10.9 | 1.68 | -- | -2.07 | -- | -- | 0.823 | -- | 15.78 | 252 | -- | -- |
| 113.79 | 0.497 | 11 | -- | 0.506 | -1.14 | -- | -- | 0.483 | 4.84 | 15.53 | 258 | -- | -- |
| 126.25 | 0.525 | 11 | 1.24 | -- | -- | -- | -- | 0.529 | -- | -- | -- | -- | -- |
| 128.8 | 0.531 | 11 | -- | 0.85 | -- | -- | -- | 0.373 | 4.7 | -- | -- | -- | -- |
| 121.44 | 0.513 | 11 | -- | -- | -1.32 | -- | -- | 0.583 | -- | 20.3 | 233 | -- | -- |
| 167.12 | 0.603 | 11 | -- | -- | -- | -- | -- | 0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 5 | 45.96 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 7 | 46.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 46 | 47.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 53 | 47.62 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 97 | 48.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 109 | 48.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 130 | 49.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 180 | 49.63 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 184 | 49.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 188 | 49.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 227 | 50.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 238 | 50.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 259 | 50.37 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 275 | 50.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 277 | 50.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 378 | 51.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 445 | 51.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 479 | 51.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 651 | 52.86 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 671 | 52.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 676 | 52.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 725 | 53.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 794 | 53.41 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 931 | 53.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 990 | 53.78 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |