Os07g0565600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Thylakoid lumen PPIase of 38 kDa) (p38).
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Os07g0565600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Thylakoid lumen PPIase of 38 kDa) (p38).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.27 | 0.408 | 11.2 | -2.01 | 1.25 | -0.412 | 0.169 | -1.83 | -1.13 | 23.9 | -0.1367 | 16556 | -- | -- |
| 78.18 | 0.412 | 11.2 | -1.92 | 1.35 | -0.588 | 0.126 | -- | -1.13 | 0.0504 | 0.8194 | 19845 | -- | -- |
| 75.36 | 0.404 | 11.3 | -2.02 | 1.24 | -0.41 | -- | -1.84 | -1.13 | 23.9 | -0.1448 | 16624 | -- | -- |
| 76.71 | 0.408 | 11.3 | -1.88 | 1.27 | -0.769 | -- | -- | -1.13 | 23.8 | 0.4982 | 20567 | -- | -- |
| 170.9 | 0.609 | 11.2 | -1.91 | -- | -0.417 | -- | -2.19 | -1.08 | -- | -0.1194 | 17010 | -- | -- |
| 90.87 | 0.447 | 11.2 | -2.23 | 1.26 | -- | 0.181 | -- | -1.07 | 23.9 | -- | -- | -- | -- |
| 91.01 | 0.447 | 11.2 | -2.23 | 1.25 | -- | -- | -- | -1.07 | 23.9 | -- | -- | -- | -- |
| 173.21 | 0.613 | 11.2 | -1.93 | -- | -0.839 | -- | -- | -1.18 | -- | 0.4224 | 17206 | -- | -- |
| 126.02 | 0.523 | 11.2 | -- | 1.21 | -1.31 | -- | -- | -1.14 | 23.8 | 1.231 | 47520 | -- | -- |
| 190.05 | 0.644 | 11.2 | -2.2 | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
| 222.64 | 0.698 | 11.2 | -- | 1.23 | -- | -- | -- | -0.82 | 23.8 | -- | -- | -- | -- |
| 218.76 | 0.689 | 11.2 | -- | -- | -1.33 | -- | -- | -1.13 | -- | 1.124 | 47520 | -- | -- |
| 317.34 | 0.831 | 11.1 | -- | -- | -- | -- | -- | -0.809 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.83 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 2 | 75.18 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 4 | 75.48 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 5 | 75.48 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 6 | 75.48 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 7 | 75.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 17 |
| 8 | 75.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 9 | 75.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 10 | 75.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 17 | 75.62 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 22 | 75.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 31 | 75.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 32 | 75.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 33 | 75.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 35 | 75.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 39 | 75.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 41 | 75.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 42 | 75.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 52 | 75.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 18 |
| 120 | 75.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 121 | 75.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 125 | 75.99 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 131 | 76.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 135 | 76.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 167 | 76.05 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 168 | 76.05 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 184 | 76.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 259 | 76.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 262 | 76.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 275 | 76.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 9 |
| 280 | 76.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 327 | 76.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 331 | 76.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 335 | 76.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 343 | 76.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 531 | 76.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 560 | 76.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 561 | 76.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 562 | 76.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 564 | 76.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 22 |
| 565 | 76.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 23 |
| 568 | 76.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 571 | 76.75 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 15 | NA |
| 575 | 76.76 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 576 | 76.76 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 583 | 76.76 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |
| 604 | 76.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 614 | 76.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 621 | 76.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 631 | 76.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 633 | 76.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 640 | 76.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 680 | 76.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 681 | 76.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 684 | 76.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 19 |
| 702 | 76.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 704 | 76.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 711 | 76.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 747 | 76.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 758 | 76.96 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 867 | 77.09 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 904 | 77.11 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 948 | 77.21 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 991 | 77.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 995 | 77.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 17 |
| 999 | 77.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 16 |