Os07g0565500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0565500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.96 | 0.607 | 7.51 | 0.269 | 2.81 | 1.92 | 0.527 | 1.08 | 0.666 | 1.86 | 6.943 | 4348 | 13 | 6.47 |
| 164.44 | 0.597 | 7.52 | 0.337 | 2.99 | 2.08 | 0.571 | -- | 0.631 | 2.21 | 6.7 | 4448 | 13 | 6.63 |
| 164.28 | 0.597 | 7.5 | 0.268 | 3 | 2.27 | -- | 0.942 | 0.656 | 2.3 | 6.76 | 4452 | 13 | 6.9 |
| 164.8 | 0.598 | 7.53 | 0.293 | 3 | 2.15 | -- | -- | 0.628 | 2.27 | 6.792 | 4448 | 13 | 7.12 |
| 212.83 | 0.679 | 7.47 | 0.558 | -- | 3.57 | -- | -1.9 | 0.846 | -- | 7.677 | 6683 | 13.9 | 7.54 |
| 239.79 | 0.726 | 7.54 | 0.992 | 2.84 | -- | 0.747 | -- | 0.689 | 1.59 | -- | -- | -- | -- |
| 242.02 | 0.729 | 7.54 | 0.967 | 2.84 | -- | -- | -- | 0.685 | 1.61 | -- | -- | -- | -- |
| 189.54 | 0.641 | 7.5 | 0.295 | -- | 4.26 | -- | -- | 0.763 | -- | 7.4 | 6656 | 14.1 | 7.74 |
| 166.71 | 0.601 | 7.54 | -- | 3 | 2.25 | -- | -- | 0.591 | 2.29 | 6.8 | 4448 | 13 | 7.07 |
| 736.02 | 1.27 | 7.5 | 1.08 | -- | -- | -- | -- | 0.747 | -- | -- | -- | -- | -- |
| 266.65 | 0.764 | 7.56 | -- | 2.86 | -- | -- | -- | 0.577 | 1.62 | -- | -- | -- | -- |
| 191.61 | 0.645 | 7.5 | -- | -- | 4.32 | -- | -- | 0.762 | -- | 7.4 | 6658 | 14 | 7.82 |
| 766.87 | 1.29 | 7.53 | -- | -- | -- | -- | -- | 0.627 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.57 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 4 | 170.40 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 54 | 175.86 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 61 | 176.38 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 64 | 176.58 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 81 | 177.77 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 94 | 178.33 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 104 | 178.97 | wind | 7 | 4320 | < th | dose independent | sin | 19 | NA |
| 108 | 179.10 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 118 | 179.41 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 133 | 179.78 | wind | 7 | 4320 | > th | dose independent | sin | 19 | NA |
| 187 | 181.43 | wind | 7 | 4320 | < th | dose independent | rect. | 5 | 14 |
| 223 | 182.15 | wind | 7 | 4320 | > th | dose independent | rect. | 5 | 14 |
| 252 | 182.57 | wind | 5 | 4320 | > th | dose dependent | sin | 19 | NA |
| 337 | 183.77 | wind | 7 | 4320 | < th | dose independent | rect. | 24 | 19 |
| 377 | 184.28 | wind | 7 | 4320 | > th | dose independent | rect. | 24 | 19 |
| 429 | 184.84 | wind | 7 | 4320 | < th | dose independent | rect. | 5 | 20 |
| 476 | 185.33 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 487 | 185.43 | wind | 7 | 4320 | > th | dose independent | rect. | 5 | 20 |
| 542 | 185.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 658 | 187.05 | wind | 7 | 4320 | < th | dose independent | no | NA | NA |
| 672 | 187.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 680 | 187.26 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 701 | 187.50 | wind | 7 | 4320 | > th | dose independent | no | NA | NA |
| 714 | 187.67 | wind | 5 | 4320 | > th | dose dependent | rect. | 5 | 20 |
| 717 | 187.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 742 | 187.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 756 | 188.07 | wind | 5 | 4320 | > th | dose dependent | rect. | 24 | 20 |
| 769 | 188.22 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 775 | 188.26 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 784 | 188.35 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 802 | 188.53 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 838 | 188.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 843 | 189.00 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 13 |
| 853 | 189.05 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 875 | 189.17 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 888 | 189.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 905 | 189.48 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 919 | 189.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 958 | 190.01 | wind | 5 | 4320 | > th | dose dependent | no | NA | NA |
| 960 | 190.08 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |