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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0565400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0189) R2 : 0.00379
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0524 (0.0398) R2dN8 : 0.0049 R2N8 : 0.00379
σ : 0.356
deviance : 58.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.66 0.354 2.99 0.0903 0.15 -0.191 -0.192 0.0619 0.0243 3.49 91 36 -- --
56.66 0.351 2.99 0.0909 0.153 -0.191 -0.164 -- 0.0235 3.5 91 35 -- --
56.73 0.351 2.99 0.0966 0.155 -0.194 -- -0.0799 0.028 3.59 91 41 -- --
56.74 0.351 2.99 0.0955 0.155 -0.201 -- -- 0.0237 3.58 91 40 -- --
57.65 0.354 2.98 0.0861 -- -0.0854 -- -0.0588 0.048 -- 91 41 -- --
57.46 0.355 2.98 0.0695 0.0687 -- -0.263 -- 0.0577 3.39 -- -- -- --
57.68 0.356 2.98 0.0744 0.0673 -- -- -- 0.0592 3.34 -- -- -- --
57.66 0.354 2.98 0.0883 -- -0.0894 -- -- 0.046 -- 91 40 -- --
56.98 0.352 2.99 -- 0.152 -0.189 -- -- 0.0155 3.58 91 40 -- --
57.93 0.356 2.98 0.0772 -- -- -- -- 0.061 -- -- -- -- --
57.82 0.356 2.98 -- 0.0688 -- -- -- 0.0509 3.34 -- -- -- --
57.87 0.354 2.98 -- -- -0.0809 -- -- 0.038 -- 91 40 -- --
58.09 0.356 2.98 -- -- -- -- -- 0.0524 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.52 radiation 10.0 10 > th dose independent rect. 6 1
27 53.52 radiation 10.0 10 > th dose dependent rect. 6 1
53 54.17 wind 9.0 1440 < th dose independent rect. 23 1
54 54.17 temperature 10.0 1440 > th dose independent rect. 23 1
57 54.17 temperature 30.0 1440 < th dose independent rect. 23 1
61 54.17 humidity 50.0 1440 > th dose independent rect. 23 1
71 54.17 atmosphere 995.0 1440 > th dose independent rect. 23 1
72 54.17 radiation 1.0 1440 < th dose independent rect. 23 1
92 54.17 temperature 10.0 1440 > th dose independent rect. 24 23
95 54.17 radiation 1.0 1440 < th dose dependent rect. 23 1
100 54.23 temperature 25.0 30 > th dose independent rect. 22 1
102 54.27 temperature 20.0 30 > th dose dependent rect. 22 1
104 54.27 atmosphere 1005.0 30 > th dose dependent rect. 22 1
106 54.28 humidity 90.0 30 < th dose independent rect. 22 1
108 54.34 atmosphere 1005.0 30 > th dose independent rect. 22 1
112 54.37 wind 3.0 30 < th dose independent rect. 22 1
115 54.39 humidity 80.0 30 > th dose independent rect. 22 1
117 54.41 precipitation 0.1 30 < th dose independent rect. 22 1
118 54.41 precipitation 0.1 30 < th dose dependent rect. 22 1
119 54.42 humidity 90.0 30 < th dose dependent rect. 22 1
120 54.43 wind 1.0 30 > th dose independent rect. 22 1
124 54.44 temperature 10.0 30 > th dose independent rect. 22 1
126 54.44 temperature 30.0 30 < th dose independent rect. 22 1
127 54.44 humidity 50.0 30 > th dose independent rect. 22 1
131 54.44 atmosphere 1010.0 30 < th dose independent rect. 22 1
133 54.44 radiation 1.0 30 < th dose independent rect. 22 1
138 54.44 temperature 10.0 30 > th dose independent rect. 23 23
139 54.44 wind 5.0 30 < th dose dependent rect. 22 1
142 54.44 radiation 1.0 30 < th dose dependent rect. 22 1
149 54.47 radiation 40.0 43200 < th dose dependent rect. 23 1
150 54.48 humidity 50.0 30 > th dose dependent rect. 22 1
153 54.53 wind 1.0 30 > th dose dependent rect. 22 1
157 54.65 atmosphere 1015.0 30 < th dose dependent rect. 22 1
159 54.67 atmosphere 1005.0 90 < th dose dependent rect. 3 1
166 54.75 temperature 20.0 10 > th dose dependent rect. 3 1
167 54.77 wind 3.0 30 < th dose dependent rect. 6 1
168 54.77 temperature 30.0 30 < th dose dependent rect. 22 1
170 54.80 wind 9.0 30 < th dose independent rect. 23 23
175 54.85 atmosphere 1005.0 30 > th dose dependent rect. 6 1
199 55.10 humidity 80.0 30 > th dose dependent rect. 6 1
232 55.28 temperature 30.0 30 < th dose dependent rect. 6 1
250 55.51 wind 3.0 30 < th dose independent rect. 6 1
256 55.60 temperature 25.0 720 > th dose dependent rect. 19 1
262 55.68 temperature 20.0 30 > th dose independent rect. 6 1
265 55.69 humidity 80.0 30 > th dose independent rect. 6 1
266 55.69 atmosphere 1005.0 30 > th dose independent rect. 6 1
270 55.70 temperature 10.0 30 > th dose independent rect. 6 1
272 55.70 temperature 30.0 30 < th dose independent rect. 6 1
273 55.70 humidity 50.0 30 > th dose independent rect. 6 1
276 55.70 atmosphere 995.0 30 > th dose independent rect. 6 1
277 55.70 atmosphere 1015.0 30 < th dose independent rect. 6 1
278 55.70 radiation 20.0 30 < th dose independent rect. 6 1
281 55.70 precipitation 0.1 30 < th dose independent rect. 6 1
282 55.70 temperature 10.0 30 > th dose independent rect. 7 23
284 55.70 precipitation 0.1 30 < th dose dependent rect. 6 1
285 55.71 wind 9.0 1440 < th dose independent rect. 7 1
287 55.71 temperature 10.0 1440 > th dose independent rect. 7 1
291 55.71 temperature 30.0 1440 < th dose independent rect. 7 1
295 55.71 humidity 50.0 1440 > th dose independent rect. 7 1
301 55.71 atmosphere 995.0 1440 > th dose independent rect. 7 1
302 55.71 atmosphere 1015.0 1440 < th dose independent rect. 7 1
303 55.71 temperature 10.0 1440 > th dose independent rect. 8 23
307 55.72 wind 1.0 30 > th dose independent rect. 6 1
308 55.72 humidity 90.0 30 < th dose independent rect. 6 1
311 55.73 wind 9.0 30 < th dose independent rect. 7 23
318 55.79 radiation 20.0 10 < th dose dependent rect. 6 1
323 55.84 temperature 10.0 30 > th dose dependent rect. 6 1
350 55.90 atmosphere 1015.0 720 < th dose independent rect. 3 8
352 55.91 wind 9.0 720 < th dose independent rect. 3 8
357 55.93 temperature 15.0 720 > th dose independent rect. 3 8
358 55.93 temperature 15.0 720 > th dose independent rect. 11 16
362 55.96 wind 7.0 720 > th dose independent rect. 22 1
364 55.98 atmosphere 1010.0 10 < th dose independent rect. 23 23
367 55.99 atmosphere 995.0 720 > th dose independent rect. 3 8
370 56.01 radiation 30.0 1440 > th dose independent rect. 16 1
385 56.02 wind 7.0 90 > th dose independent rect. 22 1
387 56.02 radiation 10.0 1440 > th dose independent rect. 5 1
403 56.02 humidity 50.0 720 > th dose independent rect. 3 8
417 56.02 wind 7.0 90 > th dose dependent rect. 22 1
418 56.02 wind 7.0 720 > th dose dependent rect. 22 1
419 56.02 radiation 10.0 1440 > th dose dependent rect. 5 1
435 56.05 atmosphere 1010.0 10 < th dose independent rect. 4 22
446 56.08 atmosphere 1010.0 10 < th dose independent rect. 4 18
451 56.08 radiation 10.0 30 < th dose dependent rect. 23 23
452 56.09 temperature 10.0 720 > th dose independent rect. 15 8
453 56.09 temperature 10.0 720 > th dose independent rect. 23 16
457 56.09 temperature 20.0 30 > th dose dependent rect. 2 5
459 56.10 atmosphere 995.0 30 > th dose independent rect. 23 23
461 56.11 wind 9.0 720 < th dose independent rect. 15 8
465 56.14 radiation 40.0 720 < th dose independent rect. 15 8
471 56.16 atmosphere 1005.0 10 < th dose independent rect. 3 1
478 56.16 atmosphere 1010.0 10 < th dose independent rect. 4 16
500 56.18 radiation 30.0 720 > th dose dependent rect. 16 1
520 56.19 precipitation 0.1 30 < th dose independent rect. 7 23
523 56.19 precipitation 0.1 30 < th dose dependent rect. 7 23
533 56.22 temperature 25.0 720 > th dose independent rect. 19 3
535 56.23 atmosphere 1010.0 10 < th dose independent rect. 24 11
548 56.26 atmosphere 1005.0 270 < th dose dependent rect. 24 1
552 56.27 wind 9.0 720 < th dose independent rect. 11 16
566 56.30 atmosphere 1015.0 30 < th dose dependent rect. 6 1
573 56.32 radiation 10.0 30 < th dose independent rect. 23 23
579 56.33 radiation 10.0 30 < th dose dependent rect. 4 22
586 56.35 atmosphere 1005.0 10 > th dose independent rect. 24 11
588 56.35 humidity 50.0 30 > th dose independent rect. 23 23
596 56.37 atmosphere 1010.0 10 < th dose independent rect. 4 11
597 56.37 precipitation 0.1 720 < th dose independent rect. 23 16
598 56.37 humidity 90.0 10 < th dose dependent rect. 6 1
601 56.37 precipitation 0.1 720 < th dose dependent rect. 23 16
628 56.40 precipitation 0.1 720 < th dose independent rect. 3 8
629 56.40 wind 9.0 720 < th dose independent rect. 23 16
639 56.40 precipitation 0.1 720 < th dose dependent rect. 3 8
640 56.41 atmosphere 1010.0 10 < th dose independent rect. 4 7
649 56.42 precipitation 0.1 720 < th dose independent rect. 15 8
658 56.42 precipitation 0.1 720 < th dose dependent rect. 15 8
662 56.43 wind 3.0 10 < th dose dependent rect. 2 6
678 56.44 atmosphere 1010.0 10 < th dose independent rect. 4 13
680 56.44 atmosphere 1010.0 10 < th dose independent rect. 24 20
688 56.45 atmosphere 995.0 720 > th dose independent rect. 23 16
690 56.45 precipitation 0.1 30 < th dose independent rect. 23 23
695 56.45 precipitation 0.1 30 < th dose dependent rect. 23 23
699 56.46 wind 3.0 10 < th dose dependent rect. 2 2
705 56.47 radiation 10.0 30 < th dose independent rect. 4 22
727 56.49 atmosphere 1005.0 10 > th dose independent rect. 3 19
728 56.49 atmosphere 1005.0 10 > th dose independent rect. 24 22
746 56.51 atmosphere 1005.0 30 > th dose independent rect. 3 8
747 56.51 precipitation 0.1 720 < th dose independent rect. 3 16
748 56.51 precipitation 0.1 720 < th dose independent rect. 11 16
753 56.51 precipitation 0.1 720 < th dose dependent rect. 3 16
754 56.51 precipitation 0.1 720 < th dose dependent rect. 11 16
760 56.53 precipitation 0.1 1440 < th dose independent rect. 23 1
763 56.53 precipitation 0.1 1440 < th dose dependent rect. 23 1
770 56.54 atmosphere 995.0 10 > th dose dependent rect. 24 11
781 56.55 temperature 25.0 720 > th dose dependent rect. 23 10
785 56.55 radiation 10.0 30 < th dose dependent rect. 4 18
788 56.56 wind 1.0 10 < th dose independent rect. 2 2
790 56.56 wind 9.0 720 < th dose independent rect. 19 8
798 56.57 temperature 20.0 10 > th dose independent rect. 2 2
799 56.57 precipitation 0.1 720 < th dose independent rect. 7 8
803 56.57 atmosphere 1010.0 10 < th dose independent rect. 24 15
807 56.57 precipitation 0.1 720 < th dose dependent rect. 7 8
810 56.58 atmosphere 1005.0 90 > th dose independent rect. 3 6
812 56.58 radiation 20.0 10 < th dose independent rect. 24 10
814 56.58 atmosphere 1005.0 10 > th dose independent rect. 24 20
817 56.59 atmosphere 1010.0 10 < th dose independent sin 5 NA
821 56.59 temperature 15.0 1440 > th dose independent rect. 13 10
822 56.59 atmosphere 1010.0 10 < th dose independent rect. 12 10
825 56.59 temperature 15.0 10 > th dose independent rect. 22 14
834 56.60 precipitation 0.1 720 < th dose independent rect. 19 8
835 56.60 temperature 25.0 720 > th dose independent rect. 24 9
836 56.60 atmosphere 995.0 10 > th dose independent rect. 12 10
840 56.60 precipitation 0.1 30 < th dose independent rect. 22 14
844 56.60 atmosphere 1010.0 10 < th dose independent rect. 12 23
850 56.60 precipitation 0.1 720 < th dose dependent rect. 19 8
852 56.60 precipitation 0.1 30 < th dose dependent rect. 22 14
853 56.61 wind 3.0 90 < th dose independent rect. 2 1
863 56.61 precipitation 0.1 90 < th dose independent rect. 1 23
873 56.61 precipitation 0.1 90 < th dose dependent rect. 1 23
876 56.62 temperature 25.0 720 < th dose independent rect. 19 4
877 56.62 atmosphere 995.0 720 > th dose independent rect. 15 8
879 56.62 wind 9.0 10 < th dose independent rect. 12 10
881 56.62 temperature 10.0 10 > th dose independent rect. 12 10
886 56.62 atmosphere 995.0 10 > th dose independent rect. 22 14
887 56.62 radiation 20.0 10 < th dose independent rect. 4 18
889 56.62 wind 1.0 90 > th dose independent rect. 1 23
895 56.62 temperature 20.0 30 > th dose dependent rect. 20 11
896 56.63 wind 1.0 90 > th dose independent rect. 2 1
897 56.63 temperature 25.0 720 < th dose independent rect. 17 6
905 56.63 wind 9.0 10 < th dose independent rect. 22 14
909 56.63 atmosphere 1015.0 720 < th dose independent rect. 3 16
919 56.63 radiation 40.0 90 < th dose dependent rect. 23 11
929 56.64 precipitation 0.1 90 < th dose independent rect. 10 13
930 56.64 temperature 10.0 1440 > th dose independent rect. 23 14
933 56.64 atmosphere 995.0 1440 > th dose independent rect. 23 14
934 56.64 atmosphere 1010.0 10 < th dose independent rect. 8 14
935 56.64 atmosphere 1015.0 10 < th dose independent rect. 22 14
947 56.64 precipitation 0.1 90 < th dose dependent rect. 10 13
951 56.65 temperature 25.0 720 < th dose independent rect. 21 2
952 56.65 temperature 25.0 720 > th dose independent rect. 3 5
955 56.65 temperature 10.0 720 > th dose independent rect. 7 8
956 56.65 temperature 10.0 720 > th dose independent rect. 19 8
957 56.65 temperature 30.0 720 < th dose independent rect. 19 8
958 56.65 humidity 50.0 720 > th dose independent rect. 19 8
959 56.65 atmosphere 995.0 720 > th dose independent rect. 19 8
960 56.65 atmosphere 1015.0 720 < th dose independent rect. 7 8
961 56.65 radiation 1.0 720 < th dose independent rect. 19 8
968 56.65 wind 9.0 720 < th dose independent rect. 15 16
969 56.65 temperature 10.0 720 > th dose independent rect. 3 16
970 56.65 temperature 10.0 720 > th dose independent rect. 15 16
975 56.65 atmosphere 995.0 30 > th dose independent rect. 7 23
986 56.65 wind 7.0 10 < th dose dependent rect. 22 6
988 56.65 radiation 1.0 720 < th dose dependent rect. 19 8
997 56.66 atmosphere 1005.0 720 > th dose independent rect. 23 1