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Os07g0563700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : IKI3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.83 (0.0238) R2 : 0.739
β1 : 1.3 (0.0878) R2dD : 0.132 R2D : 0.122
β2 : 0.899 (0.0808) R2dC : 0.128 R2C : 0.343
β3 : 1.52 (0.102) R2dE : 0.234 R2E : 0.482
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.303 (0.0509) R2dN8 : 0.0274 R2N8 : -0.000749
σ : 0.446
deviance : 91.51
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C
peak time of C : 15.6
E
wheather : temperature
threshold : 1.359
memory length : 127
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.43
open length of G : 19.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.79 0.445 9.83 1.36 0.838 1.49 -0.332 1.62 0.297 15.7 6.338 94 7.78 19.5
91.15 0.445 9.84 1.29 0.912 1.5 0.42 -- 0.308 15.7 4.098 124 7.43 19.8
89.89 0.442 9.82 1.34 0.839 1.49 -- 1.34 0.291 15.7 5.985 99 7.7 19.5
91.51 0.446 9.83 1.3 0.899 1.52 -- -- 0.303 15.6 1.359 127 7.43 19.8
107.29 0.482 9.85 1.41 -- 2.22 -- 1.73 0.253 -- 6.331 113 7.48 19.3
124.52 0.523 9.84 1.44 1.79 -- 0.856 -- 0.342 16.5 -- -- -- --
126.49 0.527 9.84 1.44 1.79 -- -- -- 0.346 16.5 -- -- -- --
107.89 0.484 9.85 1.19 -- 2.3 -- -- 0.225 -- 7.396 123 7.43 19.1
135.89 0.543 9.84 -- 0.941 1.52 -- -- 0.204 15.6 3.089 121 7.48 20
298.54 0.807 9.83 1.37 -- -- -- -- 0.299 -- -- -- -- --
181.41 0.63 9.88 -- 1.77 -- -- -- 0.185 16.5 -- -- -- --
140.84 0.553 9.88 -- -- 2.4 -- -- 0.0726 -- 11.52 138 7.41 18.9
348.32 0.871 9.86 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.65 temperature 10.0 90 > th dose dependent rect. 8 19
2 92.14 temperature 10.0 10 > th dose dependent rect. 8 20
9 94.85 temperature 30.0 270 < th dose dependent rect. 3 2
16 95.70 temperature 10.0 270 > th dose dependent rect. 21 14
18 95.78 temperature 30.0 90 < th dose dependent rect. 3 6
19 95.86 temperature 30.0 90 < th dose dependent rect. 3 16
21 95.88 wind 7.0 270 < th dose independent rect. 6 21
22 96.08 temperature 30.0 90 < th dose dependent rect. 3 18
23 96.20 temperature 10.0 270 > th dose dependent rect. 6 7
28 96.37 wind 5.0 270 < th dose independent rect. 3 2
39 96.90 temperature 30.0 90 < th dose dependent rect. 3 8
53 97.26 precipitation 0.1 270 < th dose independent rect. 3 2
54 97.26 precipitation 0.1 270 < th dose dependent rect. 3 2
60 97.54 temperature 30.0 270 < th dose dependent rect. 1 7
61 97.61 temperature 20.0 270 > th dose independent rect. 6 20
66 97.85 temperature 25.0 270 < th dose independent rect. 3 2
67 97.85 atmosphere 1000.0 90 > th dose dependent rect. 3 5
68 97.86 temperature 10.0 90 > th dose dependent rect. 8 7
69 97.90 temperature 25.0 270 < th dose independent rect. 2 6
75 98.02 wind 1.0 270 > th dose independent rect. 2 4
78 98.10 temperature 10.0 10 > th dose dependent rect. 8 8
89 98.32 temperature 30.0 270 < th dose dependent rect. 1 18
96 98.39 precipitation 0.1 90 < th dose independent rect. 3 5
97 98.39 precipitation 0.1 90 < th dose dependent rect. 3 5
104 98.56 radiation 1.0 270 < th dose dependent rect. 3 2
107 98.59 temperature 10.0 270 > th dose independent rect. 3 2
110 98.59 humidity 50.0 270 > th dose independent rect. 3 2
113 98.59 atmosphere 995.0 270 > th dose independent rect. 3 2
114 98.59 atmosphere 1010.0 270 < th dose independent rect. 3 2
116 98.59 radiation 20.0 270 < th dose independent rect. 3 2
119 98.59 temperature 10.0 270 > th dose independent rect. 5 22
120 98.61 radiation 40.0 270 < th dose dependent rect. 3 2
138 98.71 radiation 1.0 270 < th dose independent rect. 3 2
154 98.80 temperature 30.0 10 < th dose dependent rect. 4 18
155 98.81 temperature 30.0 10 < th dose dependent rect. 4 16
161 98.87 atmosphere 995.0 270 > th dose dependent rect. 3 3
167 98.92 radiation 20.0 270 < th dose dependent rect. 2 5
172 99.01 radiation 10.0 270 < th dose independent rect. 2 5
179 99.08 atmosphere 1000.0 10 > th dose dependent rect. 3 5
185 99.11 precipitation 0.1 90 < th dose independent rect. 8 19
186 99.11 precipitation 0.1 90 < th dose dependent rect. 8 19
190 99.16 temperature 10.0 90 > th dose independent rect. 3 5
193 99.16 humidity 50.0 90 > th dose independent rect. 3 5
195 99.16 atmosphere 995.0 90 > th dose independent rect. 3 5
196 99.16 atmosphere 1015.0 90 < th dose independent rect. 3 5
198 99.16 temperature 10.0 90 > th dose independent rect. 8 19
210 99.26 radiation 40.0 90 < th dose independent rect. 3 5
212 99.28 wind 7.0 270 < th dose independent rect. 6 9
252 99.53 precipitation 0.1 270 < th dose independent rect. 6 21
254 99.53 precipitation 0.1 270 < th dose dependent rect. 6 21
270 99.66 wind 9.0 270 < th dose dependent rect. 3 3
291 99.80 radiation 1.0 270 < th dose dependent rect. 3 8
309 99.88 wind 9.0 270 < th dose dependent rect. 6 20
366 100.28 wind 9.0 90 < th dose dependent rect. 3 5
377 100.39 wind 9.0 270 < th dose dependent rect. 7 7
393 100.47 precipitation 0.1 10 < th dose independent rect. 4 4
395 100.47 precipitation 0.1 10 < th dose dependent rect. 4 4
486 100.84 radiation 10.0 270 < th dose dependent rect. 2 16
490 100.89 atmosphere 1005.0 270 > th dose independent rect. 3 3
526 101.14 radiation 1.0 270 < th dose independent rect. 3 8
532 101.16 temperature 15.0 270 > th dose dependent rect. 8 2
537 101.23 temperature 25.0 270 < th dose independent rect. 1 18
608 101.55 temperature 20.0 270 > th dose independent rect. 20 16
609 101.55 humidity 50.0 270 > th dose dependent rect. 3 2
615 101.58 atmosphere 1005.0 90 > th dose independent rect. 3 5
681 101.87 radiation 1.0 270 < th dose independent rect. 3 15
687 101.92 radiation 30.0 270 < th dose independent rect. 15 15
708 102.02 temperature 15.0 90 > th dose independent rect. 8 7
726 102.08 temperature 15.0 270 > th dose independent rect. 6 8
768 102.21 atmosphere 995.0 270 > th dose independent rect. 15 15
769 102.21 temperature 25.0 90 < th dose independent rect. 3 19
779 102.23 atmosphere 995.0 90 > th dose independent rect. 15 17
788 102.25 radiation 40.0 270 < th dose dependent rect. 15 15
829 102.38 humidity 50.0 270 > th dose independent rect. 6 8
840 102.44 humidity 50.0 90 > th dose independent rect. 8 19
859 102.51 radiation 40.0 90 < th dose dependent rect. 15 17
870 102.55 atmosphere 995.0 270 > th dose independent rect. 2 16
874 102.57 wind 9.0 10 < th dose independent rect. 8 8
879 102.58 precipitation 0.1 90 < th dose independent rect. 8 7
880 102.58 atmosphere 995.0 90 > th dose independent rect. 8 19
881 102.58 precipitation 0.1 90 < th dose dependent rect. 8 7
889 102.61 precipitation 0.1 270 < th dose independent rect. 6 9
890 102.61 precipitation 0.1 270 < th dose dependent rect. 6 9
973 102.79 atmosphere 1015.0 90 < th dose independent rect. 8 7
975 102.79 temperature 10.0 90 > th dose independent rect. 15 17
983 102.82 precipitation 0.1 270 < th dose independent rect. 15 15
989 102.82 precipitation 0.1 270 < th dose dependent rect. 15 15
1000 102.85 atmosphere 1015.0 270 < th dose independent rect. 6 9