Os07g0563600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAR1 domain containing protein.
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Os07g0563600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAR1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.9 | 0.3 | 7.31 | 0.482 | 0.547 | -1.2 | -0.65 | -0.308 | 0.236 | 2.1 | 20.8 | 138 | -- | -- |
| 40.86 | 0.298 | 7.32 | 0.477 | 0.55 | -1.08 | -0.659 | -- | 0.232 | 2.07 | 21 | 108 | -- | -- |
| 42.27 | 0.303 | 7.31 | 0.534 | 0.561 | -1.16 | -- | -0.524 | 0.245 | 2.01 | 21.16 | 98 | -- | -- |
| 42.51 | 0.304 | 7.31 | 0.503 | 0.554 | -1.03 | -- | -- | 0.236 | 2.03 | 21.21 | 91 | -- | -- |
| 56.17 | 0.349 | 7.33 | 0.426 | -- | -0.813 | -- | 0.435 | 0.184 | -- | 21.41 | 1015 | -- | -- |
| 49.7 | 0.331 | 7.3 | 0.672 | 0.465 | -- | -0.604 | -- | 0.319 | 2.15 | -- | -- | -- | -- |
| 51.08 | 0.335 | 7.29 | 0.69 | 0.464 | -- | -- | -- | 0.323 | 2.13 | -- | -- | -- | -- |
| 56.33 | 0.35 | 7.31 | 0.479 | -- | -0.892 | -- | -- | 0.226 | -- | 21.43 | 1012 | -- | -- |
| 48.32 | 0.324 | 7.33 | -- | 0.559 | -1.35 | -- | -- | 0.162 | 2.21 | 21.04 | 211 | -- | -- |
| 63.97 | 0.374 | 7.29 | 0.709 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 63.61 | 0.373 | 7.31 | -- | 0.477 | -- | -- | -- | 0.246 | 2.16 | -- | -- | -- | -- |
| 61.26 | 0.365 | 7.35 | -- | -- | -0.986 | -- | -- | 0.164 | -- | 20.49 | 2410 | -- | -- |
| 77.23 | 0.41 | 7.31 | -- | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.99 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 2 | 41.01 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 6 | 41.08 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 17 |
| 8 | 41.08 | temperature | 20 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 24 | 41.41 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 23 |
| 27 | 41.42 | temperature | 20 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 29 | 41.43 | temperature | 20 | 90 | < th | dose dependent | sin | 8 | NA |
| 35 | 41.45 | temperature | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 36 | 41.46 | temperature | 20 | 90 | < th | dose dependent | no | NA | NA |
| 45 | 41.47 | temperature | 20 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 70 | 41.51 | temperature | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 71 | 41.51 | temperature | 20 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 84 | 41.52 | temperature | 20 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 85 | 41.52 | temperature | 20 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 92 | 41.55 | temperature | 20 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 99 | 41.56 | temperature | 20 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 214 | 41.78 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 18 |
| 230 | 41.84 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 22 |
| 285 | 41.93 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 23 |
| 289 | 41.94 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 21 |
| 321 | 41.98 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 336 | 42.02 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 353 | 42.04 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 354 | 42.04 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 364 | 42.07 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 368 | 42.07 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 369 | 42.07 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 375 | 42.08 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 383 | 42.10 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 388 | 42.13 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 389 | 42.13 | temperature | 20 | 270 | < th | dose dependent | sin | 18 | NA |
| 406 | 42.15 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 419 | 42.17 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 12 |
| 428 | 42.19 | temperature | 20 | 90 | < th | dose dependent | rect. | 14 | 16 |
| 512 | 42.30 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 23 |
| 528 | 42.32 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 21 |
| 541 | 42.33 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 15 |
| 544 | 42.33 | temperature | 20 | 10 | < th | dose dependent | sin | 16 | NA |
| 607 | 42.40 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 630 | 42.42 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 711 | 42.48 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 23 |
| 893 | 42.69 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 940 | 42.77 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 943 | 42.78 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 977 | 42.82 | temperature | 20 | 720 | < th | dose independent | sin | 19 | NA |
| 989 | 42.83 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |