Os07g0563000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os07g0563000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.11 | 0.355 | 10.2 | 1.37 | 0.522 | 1.03 | -0.497 | -0.987 | 0.366 | 21.2 | 26.89 | 6027 | -- | -- |
| 58.93 | 0.358 | 10.3 | 1.28 | 0.525 | 1.12 | -0.438 | -- | 0.353 | 21.2 | 26.6 | 6029 | -- | -- |
| 57.94 | 0.355 | 10.2 | 1.39 | 0.522 | 1.04 | -- | -0.981 | 0.366 | 21.4 | 26.9 | 6027 | -- | -- |
| 58.54 | 0.356 | 10.3 | 1.1 | 0.524 | 0.975 | -- | -- | 0.285 | 21.4 | 26.7 | 6049 | -- | -- |
| 73.68 | 0.4 | 10.2 | 1.4 | -- | 1.05 | -- | -1.05 | 0.365 | -- | 26.9 | 5907 | -- | -- |
| 89.22 | 0.443 | 10.3 | 0.668 | 0.495 | -- | -0.539 | -- | 0.0728 | 21.3 | -- | -- | -- | -- |
| 90.23 | 0.445 | 10.3 | 0.687 | 0.495 | -- | -- | -- | 0.0728 | 21.4 | -- | -- | -- | -- |
| 74.28 | 0.401 | 10.3 | 1.09 | -- | 0.969 | -- | -- | 0.272 | -- | 26.77 | 5932 | -- | -- |
| 82.13 | 0.422 | 10.3 | -- | 0.514 | 0.616 | -- | -- | 0.0387 | 21.4 | 29.21 | 6062 | -- | -- |
| 104.61 | 0.478 | 10.3 | 0.69 | -- | -- | -- | -- | 0.0712 | -- | -- | -- | -- | -- |
| 102.66 | 0.474 | 10.3 | -- | 0.496 | -- | -- | -- | -0.00371 | 21.5 | -- | -- | -- | -- |
| 96.87 | 0.458 | 10.3 | -- | -- | 0.627 | -- | -- | -0.0444 | -- | 29.7 | 5931 | -- | -- |
| 117.16 | 0.505 | 10.3 | -- | -- | -- | -- | -- | -0.00535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.05 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 55.39 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 3 | 55.47 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 6 | 56.10 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 7 | 56.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 11 | 56.59 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 26 | 57.04 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 31 | 57.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 52 | 57.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 58 | 57.64 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 63 | 57.71 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 74 | 57.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 76 | 57.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 107 | 58.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 111 | 58.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 182 | 58.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 213 | 58.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 230 | 58.41 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 237 | 58.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 253 | 58.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 258 | 58.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 268 | 58.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 338 | 58.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 463 | 59.14 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 625 | 59.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 712 | 59.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 865 | 59.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |