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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0561200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.00811) R2 : 0.00271
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.019 (0.0171) R2dN8 : 0.00349 R2N8 : 0.00271
σ : 0.153
deviance : 10.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
10.18 0.15 2.93 0.363 0.0544 0.179 0.0105 -1.6 0.0101 8.1 29.98 1485 -- --
10.45 0.152 2.97 0.0394 0.0621 -0.0202 -0.00824 -- -0.0145 7.48 29.98 1485 -- --
10.18 0.149 2.93 0.375 0.0581 0.193 -- -1.71 0.0126 8.11 30 1536 -- --
10.45 0.152 2.97 0.0393 0.062 -0.02 -- -- -0.0145 7.53 30 1536 -- --
10.33 0.15 2.93 0.363 -- 0.192 -- -1.7 0.0102 -- 29.99 1560 -- --
10.47 0.152 2.97 0.0417 0.0599 -- 0.000376 -- -0.0151 7.88 -- -- -- --
10.47 0.151 2.97 0.0417 0.0599 -- -- -- -0.0151 7.88 -- -- -- --
10.55 0.151 2.97 -0.0294 -- -0.0654 -- -- -0.017 -- 35.29 47520 -- --
10.49 0.152 2.97 -- 0.0628 -0.0238 -- -- -0.0186 7.43 30 1536 -- --
10.66 0.153 2.97 0.0424 -- -- -- -- -0.0143 -- -- -- -- --
10.51 0.152 2.97 -- 0.0602 -- -- -- -0.0197 7.83 -- -- -- --
10.56 0.151 2.97 -- -- -0.0504 -- -- -0.0148 -- 35.2 45924 -- --
10.71 0.153 2.97 -- -- -- -- -- -0.019 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 9.37 temperature 25.0 30 > th dose dependent rect. 22 1
2 9.38 humidity 90.0 30 < th dose independent rect. 22 1
3 9.38 wind 9.0 30 < th dose independent rect. 23 23
4 9.38 humidity 90.0 30 < th dose dependent rect. 22 1
5 9.39 wind 7.0 1440 < th dose independent rect. 23 1
7 9.39 temperature 25.0 30 > th dose independent rect. 22 1
8 9.39 temperature 10.0 1440 > th dose independent rect. 23 1
11 9.39 temperature 30.0 1440 < th dose independent rect. 23 1
15 9.39 humidity 50.0 1440 > th dose independent rect. 23 1
25 9.39 atmosphere 995.0 1440 > th dose independent rect. 23 1
26 9.39 radiation 1.0 1440 < th dose independent rect. 23 1
46 9.39 temperature 10.0 1440 > th dose independent rect. 24 23
50 9.39 radiation 1.0 1440 < th dose dependent rect. 23 1
57 9.40 atmosphere 1005.0 30 > th dose dependent rect. 22 1
58 9.41 atmosphere 1005.0 30 > th dose independent rect. 22 1
60 9.41 atmosphere 995.0 30 > th dose dependent rect. 22 1
62 9.42 wind 1.0 30 > th dose independent rect. 22 1
63 9.42 wind 3.0 30 < th dose independent rect. 22 1
67 9.42 temperature 10.0 30 > th dose independent rect. 22 1
69 9.42 temperature 30.0 30 < th dose independent rect. 22 1
70 9.42 humidity 50.0 30 > th dose independent rect. 22 1
74 9.42 atmosphere 995.0 30 > th dose independent rect. 22 1
76 9.42 atmosphere 1010.0 30 < th dose independent rect. 22 1
78 9.42 radiation 1.0 30 < th dose independent rect. 22 1
83 9.42 precipitation 0.1 30 < th dose independent rect. 22 1
84 9.42 temperature 10.0 30 > th dose independent rect. 23 23
85 9.42 wind 7.0 30 < th dose dependent rect. 22 1
87 9.42 radiation 1.0 30 < th dose dependent rect. 22 1
92 9.42 precipitation 0.1 30 < th dose dependent rect. 22 1
94 9.43 wind 1.0 30 > th dose dependent rect. 22 1
98 9.44 humidity 50.0 30 > th dose dependent rect. 22 1
103 9.46 atmosphere 1015.0 30 < th dose dependent rect. 22 1
110 9.50 temperature 30.0 30 < th dose dependent rect. 22 1
165 9.73 atmosphere 995.0 30 > th dose independent rect. 23 23
172 9.83 humidity 90.0 10 < th dose independent rect. 3 1
175 9.83 humidity 90.0 10 < th dose dependent rect. 3 1
192 9.86 temperature 25.0 30 > th dose independent rect. 20 3
199 9.88 atmosphere 1005.0 30 > th dose dependent rect. 20 3
223 9.92 atmosphere 995.0 720 > th dose independent rect. 23 16
227 9.93 atmosphere 1000.0 720 > th dose independent rect. 21 14
233 9.95 atmosphere 1000.0 720 > th dose independent rect. 23 10
235 9.96 precipitation 0.1 1440 < th dose independent rect. 23 1
236 9.96 precipitation 0.1 30 < th dose independent rect. 23 23
237 9.96 precipitation 0.1 1440 < th dose dependent rect. 23 1
238 9.96 precipitation 0.1 30 < th dose dependent rect. 23 23
241 9.97 humidity 90.0 30 < th dose independent rect. 20 3
246 9.98 atmosphere 1005.0 30 > th dose independent rect. 20 3
247 9.98 humidity 90.0 30 < th dose independent rect. 3 20
249 9.98 wind 1.0 90 < th dose dependent rect. 9 1
250 9.99 wind 1.0 10 < th dose independent rect. 9 1
252 9.99 radiation 40.0 720 < th dose independent rect. 15 8
253 9.99 atmosphere 995.0 720 > th dose independent rect. 11 10
256 9.99 temperature 25.0 90 > th dose dependent rect. 20 3
264 10.00 atmosphere 995.0 720 > th dose independent rect. 9 14
265 10.00 humidity 50.0 30 > th dose independent rect. 23 23
266 10.01 temperature 10.0 720 > th dose independent rect. 15 8
267 10.01 humidity 50.0 720 > th dose independent rect. 3 8
268 10.01 temperature 10.0 720 > th dose independent rect. 23 16
271 10.02 wind 1.0 90 < th dose independent rect. 9 1
274 10.02 temperature 10.0 720 > th dose independent rect. 3 8
275 10.02 atmosphere 995.0 720 > th dose independent rect. 3 8
277 10.02 temperature 10.0 720 > th dose independent rect. 11 16
279 10.02 wind 1.0 10 < th dose dependent rect. 9 1
286 10.03 atmosphere 1000.0 30 > th dose independent rect. 23 21
293 10.04 radiation 10.0 30 < th dose independent rect. 23 9
295 10.04 humidity 90.0 10 < th dose independent rect. 7 16
299 10.04 humidity 80.0 14400 < th dose dependent rect. 2 7
304 10.05 atmosphere 995.0 720 > th dose independent rect. 1 22
306 10.05 atmosphere 1005.0 10 > th dose dependent rect. 3 1
315 10.06 humidity 80.0 30 > th dose independent rect. 20 3
317 10.06 wind 9.0 720 < th dose independent rect. 3 8
320 10.06 temperature 30.0 270 < th dose independent rect. 10 11
323 10.06 temperature 20.0 10 < th dose dependent rect. 3 1
338 10.07 atmosphere 995.0 720 > th dose dependent rect. 23 2
343 10.07 radiation 30.0 30 < th dose dependent rect. 23 10
347 10.08 atmosphere 1015.0 720 < th dose independent rect. 3 8
348 10.08 wind 9.0 720 < th dose independent rect. 23 10
349 10.08 temperature 10.0 720 > th dose independent rect. 11 10
350 10.08 temperature 10.0 720 > th dose independent rect. 23 10
351 10.08 humidity 50.0 720 > th dose independent rect. 23 10
353 10.08 atmosphere 1000.0 30 > th dose independent rect. 23 13
354 10.08 temperature 10.0 720 > th dose independent rect. 9 14
355 10.08 temperature 10.0 720 > th dose independent rect. 21 14
357 10.08 temperature 20.0 30 > th dose independent rect. 7 16
358 10.08 precipitation 0.1 30 < th dose independent rect. 7 16
371 10.08 precipitation 0.1 30 < th dose dependent rect. 7 16
372 10.09 temperature 15.0 720 > th dose independent rect. 2 1
374 10.09 temperature 30.0 720 < th dose independent rect. 23 10
375 10.09 atmosphere 1015.0 720 < th dose independent rect. 11 10
378 10.09 precipitation 0.1 720 < th dose independent rect. 9 14
385 10.09 atmosphere 995.0 720 > th dose independent rect. 13 22
394 10.09 radiation 30.0 30 < th dose dependent rect. 23 8
398 10.09 precipitation 0.1 720 < th dose dependent rect. 9 14
400 10.09 atmosphere 995.0 90 > th dose dependent rect. 23 20
402 10.10 temperature 20.0 90 < th dose independent rect. 2 1
403 10.10 temperature 15.0 720 > th dose independent rect. 11 2
404 10.10 humidity 60.0 720 > th dose independent rect. 11 2
405 10.10 wind 5.0 30 < th dose independent rect. 20 3
406 10.10 temperature 30.0 4320 < th dose independent rect. 3 6
408 10.10 temperature 15.0 30 > th dose independent rect. 23 8
409 10.10 temperature 10.0 1440 > th dose independent rect. 24 8
412 10.10 temperature 30.0 1440 < th dose independent rect. 24 8
416 10.10 humidity 50.0 1440 > th dose independent rect. 24 8
421 10.10 atmosphere 995.0 1440 > th dose independent rect. 24 8
422 10.10 precipitation 0.1 720 < th dose independent rect. 15 8
423 10.10 atmosphere 995.0 10 > th dose independent rect. 10 10
424 10.10 precipitation 0.1 720 < th dose independent rect. 11 10
426 10.10 wind 9.0 30 < th dose independent rect. 7 16
427 10.10 temperature 10.0 1440 > th dose independent rect. 8 16
432 10.10 atmosphere 995.0 30 > th dose independent rect. 10 23
438 10.10 precipitation 0.1 720 < th dose dependent rect. 15 8
442 10.10 precipitation 0.1 720 < th dose dependent rect. 11 10
447 10.11 humidity 90.0 10 < th dose independent rect. 9 1
449 10.11 humidity 70.0 1440 < th dose independent rect. 10 1
451 10.11 atmosphere 1000.0 720 > th dose independent rect. 11 2
455 10.11 atmosphere 995.0 720 > th dose independent rect. 13 6
470 10.11 radiation 30.0 1440 < th dose independent rect. 24 7
475 10.11 wind 9.0 720 < th dose independent rect. 15 8
476 10.11 wind 7.0 30 < th dose independent rect. 23 8
480 10.11 temperature 30.0 30 < th dose independent rect. 23 8
481 10.11 humidity 50.0 30 > th dose independent rect. 23 8
484 10.11 atmosphere 995.0 30 > th dose independent rect. 23 8
491 10.11 humidity 50.0 270 > th dose independent rect. 10 11
492 10.11 wind 9.0 720 < th dose independent rect. 21 14
493 10.11 humidity 80.0 4320 > th dose independent rect. 23 14
495 10.11 temperature 10.0 30 > th dose independent rect. 7 16
497 10.11 atmosphere 1015.0 30 < th dose independent rect. 7 16
506 10.11 atmosphere 995.0 720 > th dose independent rect. 7 18
517 10.11 temperature 10.0 30 > th dose dependent rect. 23 7
518 10.11 humidity 70.0 4320 > th dose dependent rect. 3 7
527 10.12 wind 9.0 720 < th dose independent rect. 11 2
538 10.12 atmosphere 1015.0 720 < th dose independent rect. 11 2
539 10.12 radiation 10.0 270 > th dose independent rect. 7 2
546 10.12 wind 1.0 30 > th dose independent rect. 20 3
559 10.12 atmosphere 1005.0 30 > th dose independent rect. 23 7
566 10.12 humidity 80.0 4320 > th dose independent rect. 4 8
571 10.12 humidity 80.0 4320 < th dose independent rect. 4 8
580 10.12 precipitation 0.1 30 < th dose independent rect. 23 8
589 10.12 wind 9.0 270 < th dose independent rect. 10 11
593 10.12 atmosphere 1010.0 90 < th dose independent rect. 2 12
598 10.12 temperature 25.0 30 > th dose independent rect. 20 14
599 10.12 temperature 25.0 10 > th dose independent rect. 22 14
600 10.12 humidity 50.0 720 > th dose independent rect. 21 14
601 10.12 humidity 90.0 30 < th dose independent rect. 9 14
602 10.12 humidity 80.0 4320 < th dose independent rect. 23 14
605 10.12 wind 1.0 30 > th dose independent rect. 7 16
608 10.12 temperature 25.0 10 > th dose independent rect. 20 16
617 10.12 humidity 50.0 90 > th dose independent rect. 23 20
622 10.12 temperature 10.0 720 > th dose independent rect. 13 22
625 10.12 radiation 1.0 270 > th dose dependent rect. 7 2
632 10.12 wind 7.0 30 < th dose dependent rect. 20 3
638 10.12 humidity 70.0 4320 > th dose dependent rect. 4 5
639 10.12 humidity 50.0 4320 > th dose dependent rect. 3 6
645 10.12 precipitation 0.1 30 < th dose dependent rect. 23 8
655 10.12 humidity 60.0 4320 > th dose dependent rect. 23 12
660 10.12 wind 9.0 30 < th dose dependent rect. 23 23
661 10.13 humidity 80.0 4320 > th dose independent sin 5 NA
662 10.13 wind 7.0 14400 < th dose independent rect. 9 1
666 10.13 precipitation 0.1 720 < th dose independent rect. 11 2
668 10.13 humidity 90.0 10 < th dose independent rect. 7 3
672 10.13 humidity 80.0 4320 > th dose independent rect. 6 6
674 10.13 humidity 80.0 4320 < th dose independent rect. 6 6
700 10.13 precipitation 0.1 720 < th dose independent rect. 23 10
705 10.13 atmosphere 1000.0 90 > th dose independent rect. 8 11
733 10.13 wind 9.0 720 < th dose independent rect. 19 18
734 10.13 precipitation 0.1 720 < th dose independent rect. 19 18
736 10.13 precipitation 0.1 720 < th dose independent rect. 1 22
737 10.13 atmosphere 995.0 720 > th dose independent rect. 15 23
739 10.13 wind 1.0 14400 < th dose dependent rect. 13 2
741 10.13 precipitation 0.1 720 < th dose dependent rect. 11 2
744 10.13 atmosphere 1005.0 90 > th dose dependent rect. 8 3
752 10.13 atmosphere 1005.0 30 > th dose dependent rect. 17 6
760 10.13 atmosphere 995.0 90 > th dose dependent rect. 23 7
781 10.13 precipitation 0.1 720 < th dose dependent rect. 23 10
806 10.13 temperature 10.0 30 > th dose dependent rect. 7 16
809 10.13 precipitation 0.1 720 < th dose dependent rect. 19 18
811 10.13 precipitation 0.1 720 < th dose dependent rect. 1 22
814 10.14 humidity 80.0 4320 < th dose independent sin 4 NA
817 10.14 wind 1.0 720 > th dose independent rect. 23 2
832 10.14 wind 1.0 720 > th dose independent rect. 13 6
833 10.14 wind 7.0 720 < th dose independent rect. 1 6
886 10.14 wind 1.0 720 > th dose independent rect. 11 10
888 10.14 humidity 70.0 30 > th dose independent rect. 23 10
892 10.14 atmosphere 995.0 1440 > th dose independent rect. 3 12
895 10.14 temperature 30.0 4320 < th dose independent rect. 20 13
900 10.14 precipitation 0.1 270 < th dose independent rect. 21 13
901 10.14 temperature 20.0 30 > th dose independent rect. 9 14
902 10.14 temperature 30.0 720 < th dose independent rect. 9 14
907 10.14 atmosphere 1015.0 10 < th dose independent rect. 20 14
927 10.14 humidity 50.0 720 > th dose independent rect. 19 18
929 10.14 wind 1.0 30 > th dose independent rect. 2 21
930 10.14 temperature 15.0 30 > th dose independent rect. 23 21
931 10.14 atmosphere 1000.0 90 > th dose independent rect. 11 21
932 10.14 humidity 50.0 30 > th dose independent rect. 10 23
933 10.14 humidity 50.0 4320 > th dose dependent sin 7 NA
934 10.14 humidity 70.0 4320 > th dose dependent sin 4 NA
944 10.14 humidity 80.0 4320 > th dose dependent rect. 7 2
951 10.14 radiation 10.0 4320 < th dose dependent rect. 21 3
965 10.14 radiation 40.0 720 < th dose dependent rect. 1 6