Os07g0560600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0560600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.95 | 0.531 | 2.87 | 0.782 | 0.118 | -0.365 | -0.049 | 2.79 | 0.329 | 7.41 | 26.81 | 5325 | -- | -- |
| 129.95 | 0.531 | 2.96 | 0.323 | 0.15 | -0.492 | -0.146 | -- | 0.217 | 6.83 | 17.91 | 15397 | -- | -- |
| 127.96 | 0.527 | 2.87 | 0.777 | 0.117 | -0.365 | -- | 2.79 | 0.327 | 7.43 | 26.8 | 5296 | -- | -- |
| 129.65 | 0.53 | 2.95 | 0.352 | 0.136 | -0.458 | -- | -- | 0.243 | 6.9 | 18.14 | 26767 | -- | -- |
| 128.64 | 0.528 | 2.87 | 0.787 | -- | -0.381 | -- | 2.83 | 0.33 | -- | 26.85 | 5231 | -- | -- |
| 133.04 | 0.541 | 2.98 | -0.0452 | 0.138 | -- | -0.112 | -- | 0.0999 | 7.63 | -- | -- | -- | -- |
| 133.08 | 0.54 | 2.98 | -0.048 | 0.138 | -- | -- | -- | 0.1 | 7.59 | -- | -- | -- | -- |
| 129.32 | 0.53 | 2.94 | 0.561 | -- | -0.728 | -- | -- | 0.278 | -- | 15.87 | 33404 | -- | -- |
| 130.61 | 0.532 | 2.97 | -- | 0.136 | -0.379 | -- | -- | 0.144 | 6.85 | 14.2 | 33251 | -- | -- |
| 134.1 | 0.541 | 2.98 | -0.046 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 133.14 | 0.54 | 2.98 | -- | 0.138 | -- | -- | -- | 0.105 | 7.62 | -- | -- | -- | -- |
| 131.62 | 0.534 | 2.97 | -- | -- | -0.398 | -- | -- | 0.141 | -- | 12.8 | 29973 | -- | -- |
| 134.16 | 0.541 | 2.98 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.42 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 1 | 1 |
| 3 | 125.79 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 8 | 126.08 | wind | 3.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 11 | 126.53 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 12 | 126.55 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 16 | 126.76 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 22 | 126.78 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 30 | 126.84 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 6 | 2 |
| 51 | 126.97 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 2 |
| 53 | 126.98 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 107 | 127.12 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 130 | 127.19 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 3 | 7 |
| 132 | 127.19 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 133 | 127.19 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 2 | 9 |
| 140 | 127.20 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 24 | 11 |
| 154 | 127.22 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 164 | 127.23 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 220 | 127.28 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 231 | 127.29 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 233 | 127.29 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 6 | 2 |
| 253 | 127.31 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 259 | 127.31 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 346 | 127.39 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 372 | 127.41 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 393 | 127.43 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 399 | 127.43 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 411 | 127.44 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 415 | 127.44 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 22 | 4 |
| 421 | 127.45 | temperature | 25.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 437 | 127.46 | temperature | 25.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 467 | 127.47 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 5 | 4 |
| 474 | 127.48 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 491 | 127.48 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 18 |
| 494 | 127.49 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 505 | 127.49 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 507 | 127.49 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 11 |
| 525 | 127.50 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 526 | 127.50 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 1 | 1 |
| 559 | 127.51 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 599 | 127.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 614 | 127.52 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 621 | 127.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 634 | 127.52 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 651 | 127.53 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 680 | 127.53 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 697 | 127.53 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 2 | 19 |
| 725 | 127.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 733 | 127.54 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 740 | 127.54 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 744 | 127.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 857 | 127.55 | temperature | 20.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 886 | 127.55 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 970 | 127.57 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 2 |