Os07g0560400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0560400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.47 | 0.172 | 3.06 | 0.0976 | 0.0879 | 0.165 | 0.016 | 0.732 | -0.0467 | 7.66 | 89.72 | 5922 | -- | -- |
| 14.15 | 0.175 | 3.06 | 0.0542 | 0.0898 | 0.228 | -0.0205 | -- | -0.0683 | 7.27 | 96 | 4347 | -- | -- |
| 13.47 | 0.171 | 3.06 | 0.0963 | 0.088 | 0.164 | -- | 0.73 | -0.0465 | 7.6 | 89.2 | 5922 | -- | -- |
| 14.14 | 0.175 | 3.06 | 0.0494 | 0.0871 | 0.211 | -- | -- | -0.0698 | 7.4 | 99.92 | 4339 | -- | -- |
| 13.88 | 0.174 | 3.06 | 0.0975 | -- | 0.163 | -- | 0.722 | -0.0444 | -- | 89 | 5884 | -- | -- |
| 14.69 | 0.18 | 3.05 | 0.0396 | 0.0864 | -- | 0.00445 | -- | -0.025 | 7.58 | -- | -- | -- | -- |
| 14.69 | 0.179 | 3.05 | 0.0397 | 0.0865 | -- | -- | -- | -0.025 | 7.56 | -- | -- | -- | -- |
| 14.54 | 0.178 | 3.06 | 0.05 | -- | 0.21 | -- | -- | -0.0686 | -- | 109.5 | 4317 | -- | -- |
| 14.2 | 0.176 | 3.06 | -- | 0.0876 | 0.207 | -- | -- | -0.0741 | 7.37 | 151.4 | 4338 | -- | -- |
| 15.09 | 0.182 | 3.05 | 0.041 | -- | -- | -- | -- | -0.0237 | -- | -- | -- | -- | -- |
| 14.73 | 0.18 | 3.05 | -- | 0.0868 | -- | -- | -- | -0.0295 | 7.53 | -- | -- | -- | -- |
| 14.61 | 0.178 | 3.06 | -- | -- | 0.206 | -- | -- | -0.0725 | -- | 138 | 4317 | -- | -- |
| 15.14 | 0.182 | 3.05 | -- | -- | -- | -- | -- | -0.0283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.37 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 3 | 13.39 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 6 | 13.40 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 19 | 13.42 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 42 | 13.47 | humidity | 90 | 30 | < th | dose independent | rect. | 3 | 1 |
| 49 | 13.48 | humidity | 80 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 50 | 13.48 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 72 | 13.53 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 78 | 13.54 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 81 | 13.54 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 99 | 13.56 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |
| 100 | 13.56 | humidity | 80 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 112 | 13.57 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 119 | 13.57 | humidity | 70 | 4320 | > th | dose dependent | rect. | 4 | 7 |
| 129 | 13.58 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 134 | 13.58 | humidity | 70 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 145 | 13.59 | humidity | 70 | 4320 | > th | dose independent | rect. | 9 | 4 |
| 148 | 13.59 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 7 |
| 152 | 13.59 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 163 | 13.59 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 173 | 13.59 | humidity | 60 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 178 | 13.60 | humidity | 70 | 4320 | > th | dose independent | sin | 3 | NA |
| 230 | 13.60 | humidity | 80 | 14400 | < th | dose dependent | sin | 8 | NA |
| 231 | 13.60 | humidity | 80 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 260 | 13.60 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 317 | 13.61 | humidity | 50 | 4320 | > th | dose dependent | sin | 4 | NA |
| 339 | 13.61 | humidity | 90 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 355 | 13.62 | humidity | 70 | 4320 | < th | dose independent | sin | 1 | NA |
| 543 | 13.63 | humidity | 90 | 4320 | < th | dose dependent | rect. | 6 | 10 |
| 572 | 13.64 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 585 | 13.64 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 14 |
| 602 | 13.64 | humidity | 90 | 4320 | < th | dose dependent | sin | 3 | NA |
| 609 | 13.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 616 | 13.64 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 630 | 13.64 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 695 | 13.65 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 8 |
| 792 | 13.66 | humidity | 70 | 4320 | > th | dose independent | no | NA | NA |
| 797 | 13.66 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 896 | 13.66 | humidity | 70 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 897 | 13.66 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 910 | 13.66 | humidity | 80 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 969 | 13.67 | humidity | 70 | 4320 | < th | dose independent | no | NA | NA |
| 970 | 13.67 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 1 |