Os07g0559100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0559100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.63 | 0.73 | 10.7 | 0.862 | 5.32 | 3.55 | 0.126 | 1.72 | 0.132 | 21.5 | 14.85 | 277 | 23.9 | 8.45 |
| 244.27 | 0.728 | 10.7 | 0.675 | 5.28 | 3.54 | -0.405 | -- | 0.107 | 21.5 | 14.47 | 273 | 23.9 | 8.49 |
| 239.99 | 0.722 | 10.7 | 0.84 | 5.27 | 3.56 | -- | 1.61 | 0.125 | 21.5 | 14.16 | 289 | 23.7 | 8.52 |
| 242.49 | 0.725 | 10.7 | 0.656 | 5.59 | 3.92 | -- | -- | 0.0891 | 21.3 | 13.08 | 289 | 23.7 | 8.62 |
| 524.79 | 1.07 | 10.5 | 0.62 | -- | 3.97 | -- | -1.14 | 0.438 | -- | 6.773 | 47 | 17.7 | 12 |
| 396.7 | 0.934 | 10.5 | 0.996 | 3.98 | -- | -0.0836 | -- | 0.513 | 23.8 | -- | -- | -- | -- |
| 396.73 | 0.933 | 10.5 | 0.999 | 3.98 | -- | -- | -- | 0.513 | 23.8 | -- | -- | -- | -- |
| 325.65 | 0.84 | 10.4 | 0.974 | -- | 4.9 | -- | -- | 0.551 | -- | -4.641 | 265 | 14.9 | 14.4 |
| 252.3 | 0.74 | 10.7 | -- | 5.66 | 4.06 | -- | -- | 0.00473 | 21.2 | 13.55 | 287 | 23.6 | 8.8 |
| 1395.19 | 1.75 | 10.4 | 1.12 | -- | -- | -- | -- | 0.563 | -- | -- | -- | -- | -- |
| 423.04 | 0.962 | 10.5 | -- | 4 | -- | -- | -- | 0.402 | 23.8 | -- | -- | -- | -- |
| 292.83 | 0.797 | 10.5 | -- | -- | 4.47 | -- | -- | 0.246 | -- | -15.14 | 323 | 14.2 | 14.3 |
| 1428.02 | 1.76 | 10.5 | -- | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 246.34 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 7 | 256.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 19 |
| 13 | 262.85 | temperature | 20.0 | 90 | > th | dose independent | rect. | 2 | 18 |
| 18 | 264.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 21 | 265.66 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 31 | 267.74 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 35 | 269.30 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 36 | 269.34 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 40 | 270.39 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 57 | 270.74 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 60 | 271.08 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 61 | 271.11 | wind | 7.0 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 62 | 271.15 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 63 | 271.18 | wind | 7.0 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 72 | 271.68 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 76 | 272.04 | wind | 7.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 77 | 272.04 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 78 | 272.11 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 98 | 273.06 | wind | 7.0 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 99 | 273.09 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 20 | 6 |
| 105 | 273.23 | wind | 7.0 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 121 | 273.80 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 133 | 274.33 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 138 | 274.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 19 |
| 144 | 274.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 19 |
| 145 | 274.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 147 | 274.86 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 7 |
| 148 | 274.90 | temperature | 10.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 149 | 274.90 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 7 |
| 150 | 274.90 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 153 | 274.90 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 154 | 274.90 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 7 |
| 159 | 274.90 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 161 | 274.90 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 162 | 274.90 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 7 |
| 191 | 275.23 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 228 | 275.79 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 232 | 275.85 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 253 | 276.26 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 268 | 276.35 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 284 | 276.87 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 6 |
| 285 | 276.87 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 6 |
| 291 | 277.18 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 17 |
| 292 | 277.18 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 17 |
| 293 | 277.21 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 7 |
| 295 | 277.21 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 7 |
| 307 | 277.44 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 310 | 277.50 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 317 | 277.67 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 318 | 277.68 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 336 | 278.13 | wind | 7.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 338 | 278.13 | wind | 7.0 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 344 | 278.25 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 363 | 278.34 | wind | 7.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 368 | 278.42 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 388 | 278.74 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 392 | 278.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 397 | 279.11 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 418 | 279.80 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 425 | 279.98 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 24 | 5 |
| 427 | 279.99 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 3 |
| 447 | 280.49 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 2 | 18 |
| 449 | 280.59 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 454 | 280.67 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 461 | 280.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 3 |
| 463 | 280.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 3 |
| 464 | 280.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 3 |
| 465 | 280.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 3 |
| 468 | 280.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 3 |
| 469 | 280.79 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 3 |
| 475 | 280.79 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 20 | 3 |
| 484 | 280.82 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 500 | 280.93 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 501 | 280.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 506 | 281.02 | wind | 9.0 | 90 | < th | dose dependent | rect. | 20 | 6 |
| 541 | 281.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 19 |
| 543 | 281.32 | wind | 5.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 545 | 281.33 | wind | 9.0 | 10 | < th | dose dependent | rect. | 20 | 7 |
| 549 | 281.40 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 551 | 281.46 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 580 | 281.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 581 | 281.59 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 582 | 281.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 583 | 281.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 610 | 281.84 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 661 | 282.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 662 | 282.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 676 | 282.45 | wind | 3.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 679 | 282.47 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 687 | 282.55 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 688 | 282.58 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 691 | 282.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 695 | 282.58 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 701 | 282.58 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 702 | 282.58 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 723 | 282.58 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 733 | 282.71 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 734 | 282.73 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 775 | 283.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 3 |
| 776 | 283.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 3 |
| 796 | 283.56 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 797 | 283.56 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 801 | 283.59 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 831 | 283.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 5 |
| 835 | 283.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 839 | 283.91 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 849 | 283.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 851 | 283.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 852 | 284.00 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 862 | 284.05 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 889 | 284.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 892 | 284.15 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 894 | 284.16 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 895 | 284.16 | wind | 9.0 | 270 | < th | dose dependent | rect. | 20 | 3 |
| 906 | 284.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 934 | 284.37 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |