Os07g0557200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Delayed-early response protein/equilibrative nucleoside transporter family protein.
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Os07g0557200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Delayed-early response protein/equilibrative nucleoside transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.37 | 0.454 | 3.5 | -0.634 | 0.375 | 0.216 | -0.173 | -1.92 | -0.246 | 23.9 | 1.7 | 1229 | -- | -- |
| 96.98 | 0.459 | 3.54 | -0.685 | 0.401 | 0.214 | -0.422 | -- | -0.215 | 23.6 | 9.4 | 1180 | -- | -- |
| 93.48 | 0.45 | 3.5 | -0.622 | 0.374 | 0.233 | -- | -1.98 | -0.248 | 23.8 | 1.641 | 1223 | -- | -- |
| 97.22 | 0.459 | 3.53 | -0.632 | 0.397 | 0.373 | -- | -- | -0.204 | 23.6 | 9.399 | 998 | -- | -- |
| 101.79 | 0.47 | 3.5 | -0.572 | -- | 0.433 | -- | -2.02 | -0.278 | -- | 1.897 | 1035 | -- | -- |
| 97.61 | 0.463 | 3.54 | -0.691 | 0.404 | -- | -0.349 | -- | -0.225 | 23.8 | -- | -- | -- | -- |
| 98.13 | 0.464 | 3.54 | -0.677 | 0.406 | -- | -- | -- | -0.224 | 23.7 | -- | -- | -- | -- |
| 105.62 | 0.479 | 3.53 | -0.573 | -- | 0.352 | -- | -- | -0.227 | -- | 3.8 | 847 | -- | -- |
| 107.19 | 0.482 | 3.51 | -- | 0.385 | 0.63 | -- | -- | -0.12 | 23.6 | 9.145 | 1106 | -- | -- |
| 108.51 | 0.487 | 3.53 | -0.665 | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
| 110.21 | 0.491 | 3.52 | -- | 0.398 | -- | -- | -- | -0.148 | 23.6 | -- | -- | -- | -- |
| 113.69 | 0.497 | 3.52 | -- | -- | 0.525 | -- | -- | -0.169 | -- | 3.8 | 890 | -- | -- |
| 120.19 | 0.512 | 3.51 | -- | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.83 | wind | 5 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 2 | 91.90 | wind | 1 | 270 | < th | dose independent | rect. | 22 | 1 |
| 7 | 92.17 | wind | 9 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 8 | 92.18 | wind | 1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 12 | 92.22 | wind | 1 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 13 | 92.23 | wind | 1 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 21 | 92.31 | wind | 3 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 26 | 92.35 | wind | 1 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 42 | 92.44 | wind | 3 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 59 | 92.53 | wind | 1 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 60 | 92.53 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 65 | 92.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 71 | 92.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 83 | 92.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 91 | 92.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 162 | 92.97 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 165 | 92.98 | wind | 1 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 172 | 92.99 | humidity | 80 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 184 | 93.04 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 185 | 93.04 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 2 |
| 191 | 93.05 | wind | 1 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 224 | 93.11 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 231 | 93.12 | wind | 3 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 246 | 93.15 | wind | 1 | 270 | < th | dose independent | rect. | 7 | 17 |
| 298 | 93.24 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 305 | 93.25 | wind | 3 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 317 | 93.26 | wind | 7 | 14400 | < th | dose dependent | sin | 17 | NA |
| 333 | 93.29 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 339 | 93.29 | wind | 3 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 351 | 93.31 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 362 | 93.32 | wind | 1 | 14400 | > th | dose dependent | sin | 16 | NA |
| 389 | 93.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 394 | 93.36 | humidity | 90 | 43200 | < th | dose independent | sin | 6 | NA |
| 395 | 93.36 | wind | 1 | 270 | < th | dose independent | rect. | 15 | 8 |
| 403 | 93.36 | humidity | 90 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 411 | 93.37 | temperature | 25 | 30 | < th | dose independent | rect. | 23 | 4 |
| 457 | 93.40 | humidity | 90 | 43200 | > th | dose independent | sin | 7 | NA |
| 471 | 93.41 | wind | 3 | 14400 | > th | dose independent | sin | 17 | NA |
| 506 | 93.44 | radiation | 1 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 509 | 93.44 | radiation | 1 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 512 | 93.44 | wind | 3 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 540 | 93.45 | wind | 7 | 14400 | < th | dose dependent | rect. | 9 | 15 |
| 545 | 93.46 | radiation | 1 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 549 | 93.46 | humidity | 80 | 43200 | > th | dose dependent | sin | 5 | NA |
| 584 | 93.49 | wind | 3 | 14400 | < th | dose independent | sin | 17 | NA |
| 609 | 93.50 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 16 |
| 643 | 93.52 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 1 |
| 658 | 93.52 | wind | 1 | 14400 | > th | dose dependent | rect. | 9 | 15 |
| 669 | 93.53 | wind | 1 | 270 | < th | dose independent | rect. | 9 | 15 |
| 691 | 93.54 | wind | 1 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 753 | 93.58 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 790 | 93.59 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 803 | 93.60 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 839 | 93.62 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 894 | 93.64 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 895 | 93.64 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 907 | 93.65 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 911 | 93.65 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 924 | 93.65 | wind | 1 | 270 | < th | dose dependent | rect. | 19 | 2 |
| 933 | 93.66 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 3 | NA |