Os07g0557100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Delayed-early response protein/equilibrative nucleoside transporter family protein.
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Os07g0557100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Delayed-early response protein/equilibrative nucleoside transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.07 | 0.352 | 11.5 | -0.284 | 0.965 | 0.45 | 1.09 | 0.331 | -0.333 | 22.2 | 1010 | 11266 | -- | -- |
| 56.21 | 0.349 | 11.5 | -0.193 | 0.969 | 0.467 | 1.06 | -- | -0.311 | 22.2 | 1010 | 12745 | -- | -- |
| 60.79 | 0.363 | 11.5 | -0.339 | 0.958 | 0.45 | -- | 0.376 | -0.336 | 22.3 | 1010 | 11296 | -- | -- |
| 61.06 | 0.364 | 11.4 | -0.207 | 0.969 | 0.475 | -- | -- | -0.308 | 22.3 | 1010 | 11415 | -- | -- |
| 116.61 | 0.503 | 11.4 | -0.326 | -- | 0.451 | -- | 0.357 | -0.331 | -- | 1010 | 11421 | -- | -- |
| 63.94 | 0.375 | 11.5 | -0.319 | 0.969 | -- | 1.1 | -- | -0.458 | 22.1 | -- | -- | -- | -- |
| 68.66 | 0.388 | 11.5 | -0.364 | 0.962 | -- | -- | -- | -0.461 | 22.2 | -- | -- | -- | -- |
| 116.85 | 0.503 | 11.4 | -0.201 | -- | 0.498 | -- | -- | -0.313 | -- | 1010 | 11596 | -- | -- |
| 62.08 | 0.367 | 11.4 | -- | 0.97 | 0.509 | -- | -- | -0.281 | 22.3 | 1010 | 47520 | -- | -- |
| 124.92 | 0.522 | 11.5 | -0.349 | -- | -- | -- | -- | -0.459 | -- | -- | -- | -- | -- |
| 72.14 | 0.397 | 11.5 | -- | 0.961 | -- | -- | -- | -0.42 | 22.2 | -- | -- | -- | -- |
| 117.77 | 0.505 | 11.4 | -- | -- | 0.532 | -- | -- | -0.295 | -- | 1010 | 11558 | -- | -- |
| 128.14 | 0.528 | 11.4 | -- | -- | -- | -- | -- | -0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 10 | 54.54 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 16 | 54.62 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 18 | 54.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 19 | 54.75 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 23 | 54.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 34 | 54.91 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 47 | 55.02 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 53 | 55.06 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 54 | 55.07 | humidity | 50 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 56 | 55.08 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 57 | 55.11 | humidity | 50 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 62 | 55.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 67 | 55.17 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 70 | 55.18 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 84 | 55.19 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 107 | 55.24 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 109 | 55.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 116 | 55.25 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 126 | 55.27 | humidity | 50 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 127 | 55.27 | humidity | 50 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 137 | 55.28 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 182 | 55.32 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 189 | 55.35 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 192 | 55.35 | radiation | 20 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 225 | 55.41 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 236 | 55.43 | radiation | 30 | 43200 | < th | dose independent | sin | 14 | NA |
| 243 | 55.44 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 265 | 55.45 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 289 | 55.47 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 16 |
| 294 | 55.48 | temperature | 25 | 10 | > th | dose dependent | sin | 4 | NA |
| 300 | 55.49 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 314 | 55.50 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 317 | 55.50 | radiation | 20 | 43200 | > th | dose dependent | sin | 14 | NA |
| 328 | 55.50 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 338 | 55.51 | radiation | 40 | 43200 | < th | dose dependent | rect. | 15 | 17 |
| 339 | 55.52 | humidity | 50 | 43200 | > th | dose independent | sin | 9 | NA |
| 373 | 55.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 385 | 55.54 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 387 | 55.54 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 409 | 55.55 | radiation | 30 | 43200 | < th | dose dependent | rect. | 16 | 15 |
| 413 | 55.56 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 438 | 55.57 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 20 |
| 439 | 55.57 | radiation | 1 | 43200 | > th | dose dependent | sin | 13 | NA |
| 442 | 55.57 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 462 | 55.58 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 536 | 55.60 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 13 |
| 537 | 55.60 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 21 |
| 538 | 55.60 | radiation | 40 | 43200 | < th | dose dependent | sin | 13 | NA |
| 565 | 55.61 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 682 | 55.65 | radiation | 10 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 711 | 55.66 | radiation | 10 | 43200 | < th | dose dependent | sin | 12 | NA |
| 713 | 55.66 | radiation | 20 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 737 | 55.67 | humidity | 50 | 43200 | < th | dose independent | sin | 9 | NA |
| 810 | 55.69 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 2 |