Os07g0556300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Octicosapeptide/Phox/Bem1p domain containing protein.
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Os07g0556300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Octicosapeptide/Phox/Bem1p domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.68 | 0.292 | 12.1 | 0.0817 | 0.233 | -0.51 | 0.37 | 1.25 | 0.0902 | 15.6 | 9.338 | 30 | -- | -- |
| 43.35 | 0.307 | 12.1 | 0.0624 | 0.154 | -0.521 | -0.935 | -- | 0.113 | 13.1 | 9.339 | 27 | -- | -- |
| 38.84 | 0.29 | 12.1 | 0.112 | 0.227 | -0.515 | -- | 1.13 | 0.101 | 15.8 | 9.3 | 25 | -- | -- |
| 46.14 | 0.316 | 12.1 | 0.0175 | 0.234 | -0.501 | -- | -- | 0.0816 | 15.4 | 9.334 | 27 | -- | -- |
| 41.59 | 0.3 | 12.1 | 0.0936 | -- | -0.532 | -- | 1.04 | 0.0713 | -- | 9.248 | 27 | -- | -- |
| 48.87 | 0.328 | 12.1 | 0.0162 | 0.715 | -- | -0.977 | -- | 0.102 | 13 | -- | -- | -- | -- |
| 52.81 | 0.34 | 12.1 | -0.0184 | 0.719 | -- | -- | -- | 0.0978 | 13.1 | -- | -- | -- | -- |
| 48.19 | 0.323 | 12.1 | 0.0212 | -- | -0.61 | -- | -- | 0.0721 | -- | 9.3 | 37 | -- | -- |
| 46.15 | 0.316 | 12.1 | -- | 0.237 | -0.498 | -- | -- | 0.0803 | 15.3 | 9.3 | 27 | -- | -- |
| 84.84 | 0.43 | 12.1 | -0.046 | -- | -- | -- | -- | 0.0834 | -- | -- | -- | -- | -- |
| 52.82 | 0.34 | 12.1 | -- | 0.719 | -- | -- | -- | 0.0998 | 13.1 | -- | -- | -- | -- |
| 47.45 | 0.321 | 12.1 | -- | -- | -0.64 | -- | -- | 0.101 | -- | 9.28 | 159 | -- | -- |
| 84.9 | 0.43 | 12.1 | -- | -- | -- | -- | -- | 0.0885 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.69 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 11 |
| 6 | 36.99 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 12 | 37.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 36 | 37.76 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 38 | 37.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 43 | 37.88 | radiation | 10 | 90 | < th | dose independent | rect. | 13 | 21 |
| 60 | 38.12 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 4 |
| 65 | 38.14 | radiation | 10 | 30 | < th | dose independent | rect. | 24 | 22 |
| 97 | 38.44 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 2 |
| 105 | 38.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 110 | 38.52 | radiation | 10 | 30 | < th | dose independent | rect. | 24 | 20 |
| 115 | 38.57 | radiation | 10 | 30 | < th | dose independent | rect. | 5 | 15 |
| 126 | 38.67 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 130 | 38.70 | radiation | 20 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 142 | 38.75 | radiation | 10 | 30 | < th | dose independent | rect. | 17 | 23 |
| 144 | 38.75 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 156 | 38.81 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 181 | 38.91 | radiation | 10 | 30 | < th | dose independent | rect. | 15 | 23 |
| 183 | 38.92 | radiation | 10 | 30 | < th | dose independent | rect. | 9 | 23 |
| 188 | 38.94 | radiation | 10 | 30 | < th | dose independent | no | NA | NA |
| 211 | 39.03 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 213 | 39.04 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 216 | 39.05 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 11 |
| 231 | 39.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 240 | 39.12 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 244 | 39.14 | radiation | 30 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 250 | 39.16 | radiation | 10 | 30 | < th | dose independent | sin | 0 | NA |
| 252 | 39.16 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 18 |
| 262 | 39.21 | radiation | 30 | 270 | < th | dose independent | rect. | 11 | 8 |
| 277 | 39.26 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 18 |
| 289 | 39.29 | radiation | 10 | 30 | < th | dose independent | rect. | 5 | 23 |
| 311 | 39.37 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 321 | 39.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 403 | 39.63 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 447 | 39.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 11 |
| 485 | 39.80 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 486 | 39.81 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 504 | 39.85 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 20 |
| 511 | 39.86 | radiation | 10 | 30 | < th | dose independent | rect. | 21 | 23 |
| 593 | 40.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 599 | 40.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 623 | 40.07 | radiation | 10 | 30 | < th | dose dependent | sin | 23 | NA |
| 656 | 40.10 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 677 | 40.13 | radiation | 10 | 30 | < th | dose independent | rect. | 19 | 23 |
| 679 | 40.13 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 682 | 40.13 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 701 | 40.16 | radiation | 10 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 871 | 40.43 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 19 |
| 926 | 40.50 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |