FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0554600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.75 (0.0391) R2 : 0.325
β1 : 0.913 (0.147) R2dD : 0.0666 R2D : 0.00673
β2 : 1.56 (0.111) R2dC : 0.432 R2C : 0.199
β3 : 1.21 (0.192) R2dE : 0.103 R2E : -0.179
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.308 (0.09) R2dN8 : 0.029 R2N8 : -0.0257
σ : 0.715
deviance : 232.72
__
_____
C
peak time of C : 13.6
E
wheather : temperature
threshold : 29.28
memory length : 13
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.44 0.715 3.73 1.04 1.56 1.22 0.185 -0.769 0.345 13.6 29.42 10 -- --
232.03 0.715 3.75 0.903 1.57 1.23 0.445 -- 0.308 13.6 29.42 10 -- --
231.54 0.709 3.73 1.07 1.55 1.2 -- -0.932 0.348 13.6 29.42 10 -- --
232.72 0.715 3.75 0.913 1.56 1.21 -- -- 0.308 13.6 29.28 13 -- --
330.97 0.847 3.81 0.743 -- -0.376 -- -1.75 0.0518 -- 67.24 10 -- --
252.9 0.746 3.81 0.614 1.16 -- 0.283 -- 0.0631 13.4 -- -- -- --
253.22 0.745 3.81 0.623 1.16 -- -- -- 0.0646 13.4 -- -- -- --
333.48 0.851 3.84 0.502 -- -0.415 -- -- -0.0152 -- 63.03 5 -- --
252.54 0.744 3.79 -- 1.42 0.839 -- -- 0.141 13.5 29.28 13 -- --
335.96 0.856 3.82 0.577 -- -- -- -- 0.0401 -- -- -- -- --
263.45 0.759 3.82 -- 1.15 -- -- -- -0.00483 13.4 -- -- -- --
339.74 0.858 3.85 -- -- -0.573 -- -- -0.0889 -- 69.26 5 -- --
344.75 0.867 3.84 -- -- -- -- -- -0.024 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.60 wind 5 43200 > th dose independent rect. 18 3
2 227.85 wind 5 43200 < th dose independent rect. 18 3
3 228.12 wind 5 43200 > th dose independent rect. 19 1
5 228.34 wind 5 43200 > th dose dependent rect. 18 3
6 228.52 wind 5 43200 < th dose independent rect. 19 1
8 228.76 wind 9 43200 > th dose dependent rect. 17 4
11 229.04 wind 9 14400 > th dose dependent rect. 17 19
15 229.35 wind 9 43200 < th dose dependent rect. 19 2
17 229.39 temperature 30 10 < th dose dependent rect. 21 23
21 229.43 wind 5 43200 > th dose independent rect. 16 6
23 229.55 wind 5 43200 < th dose independent rect. 16 6
29 229.67 wind 9 43200 > th dose dependent rect. 20 1
33 229.80 temperature 25 1440 > th dose independent rect. 17 4
40 229.98 temperature 25 1440 < th dose independent rect. 17 4
43 230.07 temperature 25 1440 > th dose independent rect. 19 2
46 230.12 wind 9 14400 > th dose dependent rect. 20 16
47 230.14 wind 9 43200 < th dose independent rect. 20 1
55 230.27 wind 9 14400 > th dose independent rect. 17 4
57 230.30 wind 9 43200 > th dose dependent rect. 17 6
66 230.39 wind 9 14400 > th dose dependent rect. 14 21
71 230.42 temperature 25 1440 < th dose independent rect. 19 2
74 230.44 wind 9 14400 > th dose independent rect. 17 19
75 230.44 wind 9 43200 > th dose dependent rect. 17 8
83 230.55 temperature 15 10 > th dose dependent rect. 3 23
91 230.67 temperature 30 30 < th dose dependent rect. 5 23
105 230.84 humidity 60 10 < th dose independent rect. 10 1
107 230.84 humidity 60 10 < th dose dependent rect. 10 1
111 230.89 wind 9 14400 > th dose dependent rect. 14 11
122 230.97 wind 9 14400 > th dose dependent rect. 14 14
124 230.98 wind 9 43200 > th dose dependent sin 15 NA
133 231.03 wind 9 14400 > th dose dependent rect. 14 9
143 231.12 humidity 70 90 < th dose dependent rect. 8 1
144 231.12 wind 9 43200 > th dose dependent rect. 17 13
189 231.30 wind 5 43200 > th dose dependent rect. 14 11
204 231.36 temperature 15 90 > th dose dependent rect. 6 23
205 231.36 temperature 30 10 < th dose dependent rect. 13 23
214 231.40 radiation 1 43200 < th dose dependent rect. 20 4
234 231.41 temperature 15 90 > th dose dependent rect. 16 23
237 231.43 wind 9 14400 < th dose independent rect. 17 19
238 231.43 temperature 30 30 < th dose dependent rect. 1 23
240 231.44 temperature 30 10 < th dose dependent rect. 9 23
257 231.46 humidity 80 43200 > th dose independent rect. 21 2
284 231.49 temperature 30 10 < th dose dependent no NA NA
292 231.52 temperature 30 10 < th dose dependent rect. 15 23
293 231.52 temperature 30 10 < th dose dependent rect. 19 23
316 231.56 humidity 60 90 < th dose independent rect. 16 18
327 231.60 temperature 30 30 < th dose dependent rect. 11 23
330 231.62 humidity 80 43200 < th dose independent rect. 21 1
356 231.67 humidity 90 14400 > th dose dependent rect. 21 1
366 231.70 humidity 60 90 < th dose dependent rect. 16 18
369 231.71 wind 9 43200 < th dose independent rect. 13 20
392 231.85 wind 7 14400 > th dose independent rect. 5 16
412 231.87 radiation 1 4320 > th dose independent rect. 17 1
417 231.88 radiation 1 4320 < th dose independent rect. 17 1
421 231.89 wind 7 14400 < th dose independent rect. 5 16
430 231.94 wind 5 43200 > th dose independent sin 16 NA
431 231.94 wind 9 14400 > th dose dependent rect. 14 7
443 231.97 temperature 30 10 < th dose dependent rect. 23 23
447 231.99 wind 9 43200 > th dose independent rect. 13 20
456 232.02 wind 5 43200 > th dose dependent sin 16 NA
468 232.06 wind 5 43200 < th dose independent sin 16 NA
473 232.06 wind 7 43200 > th dose dependent rect. 8 13
495 232.13 wind 5 14400 > th dose dependent rect. 5 16
498 232.14 humidity 60 10 < th dose independent rect. 16 19
518 232.18 temperature 10 10 > th dose dependent no NA NA
520 232.19 humidity 60 1440 > th dose independent rect. 8 1
526 232.20 wind 7 14400 > th dose independent rect. 24 21
539 232.23 wind 9 14400 > th dose independent rect. 20 16
548 232.25 wind 9 43200 > th dose independent rect. 17 8
560 232.26 temperature 30 90 < th dose dependent rect. 7 23
562 232.27 humidity 60 4320 < th dose independent rect. 8 1
604 232.31 wind 3 43200 > th dose dependent rect. 10 12
618 232.33 wind 7 14400 < th dose independent rect. 24 21
628 232.34 temperature 20 30 < th dose dependent sin 21 NA
631 232.35 wind 9 43200 > th dose independent sin 14 NA
665 232.39 temperature 20 90 < th dose dependent rect. 5 21
667 232.40 wind 9 43200 > th dose independent rect. 17 10
683 232.41 wind 7 14400 > th dose independent rect. 5 20
698 232.43 radiation 1 4320 < th dose independent rect. 17 11
701 232.43 temperature 30 90 < th dose dependent rect. 17 23
714 232.46 radiation 1 4320 < th dose independent rect. 17 8
767 232.52 wind 7 14400 < th dose independent rect. 5 20
799 232.54 radiation 1 4320 < th dose dependent rect. 2 3
853 232.60 wind 7 14400 > th dose independent rect. 17 22
868 232.62 humidity 60 4320 < th dose dependent rect. 8 1
883 232.63 humidity 60 270 < th dose independent rect. 8 1
963 232.66 wind 7 43200 > th dose dependent sin 21 NA
991 232.69 wind 9 14400 < th dose independent rect. 20 16