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Os07g0553900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function Cys-rich family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0186) R2 : 0.816
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.19 (0.0488) R2dC : 0.816 R2C : 0.807
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.165 (0.0392) R2dN8 : 0.00922 R2N8 : -0.000122
σ : 0.351
deviance : 56.3
__
_____
C
peak time of C : 6.07
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.33 0.309 11.4 -0.123 1.98 -0.946 -0.225 0.0215 -0.118 7.07 1.357 218 -- --
43.3 0.306 11.4 -0.123 1.99 -0.958 -0.211 -- -0.118 7.1 0.78 212 -- --
43.44 0.307 11.4 -0.128 1.99 -0.948 -- 0.0206 -0.117 7.09 0.7689 215 -- --
43.43 0.307 11.4 -0.128 1.99 -0.962 -- -- -0.118 7.11 0.7356 212 -- --
113.05 0.495 11.4 -0.00267 -- -2.32 -- 1.07 0.111 -- -3.082 716 -- --
55.45 0.349 11.4 -0.154 2.19 -- -0.288 -- -0.183 6.06 -- -- -- --
55.65 0.349 11.4 -0.157 2.19 -- -- -- -0.182 6.06 -- -- -- --
114.37 0.498 11.4 0.0202 -- -2.29 -- -- 0.0873 -- -4.384 722 -- --
43.86 0.308 11.4 -- 1.99 -0.968 -- -- -0.106 7.12 0.6197 212 -- --
304.83 0.816 11.4 -0.0938 -- -- -- -- -0.133 -- -- -- -- --
56.3 0.351 11.4 -- 2.19 -- -- -- -0.165 6.07 -- -- -- --
114.38 0.498 11.4 -- -- -2.29 -- -- 0.085 -- -4.757 722 -- --
305.06 0.815 11.4 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.22 temperature 10.0 270 > th dose dependent rect. 20 7
2 31.79 temperature 10.0 270 > th dose dependent rect. 21 5
3 31.87 radiation 40.0 270 < th dose dependent rect. 3 17
8 32.48 temperature 10.0 270 > th dose dependent rect. 20 19
9 32.66 radiation 40.0 270 < th dose dependent rect. 2 19
18 33.20 radiation 40.0 270 < th dose independent rect. 3 17
21 33.25 radiation 40.0 270 < th dose independent rect. 2 19
24 33.36 radiation 40.0 270 < th dose dependent rect. 15 18
33 33.85 radiation 40.0 270 < th dose dependent rect. 16 15
37 33.96 wind 9.0 270 < th dose independent rect. 7 9
39 34.01 temperature 10.0 270 > th dose dependent rect. 9 17
41 34.05 precipitation 0.1 270 < th dose independent rect. 20 7
43 34.05 precipitation 0.1 270 < th dose dependent rect. 20 7
45 34.18 radiation 20.0 270 < th dose independent rect. 16 15
50 34.25 temperature 15.0 270 > th dose independent rect. 20 7
62 34.35 temperature 30.0 270 < th dose independent rect. 20 7
63 34.35 humidity 50.0 270 > th dose independent rect. 20 7
66 34.35 atmosphere 995.0 270 > th dose independent rect. 20 7
67 34.35 radiation 1.0 270 < th dose independent rect. 20 7
72 34.35 radiation 30.0 270 < th dose independent rect. 2 8
73 34.35 temperature 10.0 270 > th dose independent rect. 3 17
74 34.35 atmosphere 1015.0 270 < th dose independent rect. 3 17
75 34.35 radiation 1.0 270 < th dose dependent rect. 20 7
84 34.39 wind 9.0 270 < th dose independent rect. 20 7
88 34.44 atmosphere 995.0 270 > th dose independent rect. 3 17
96 34.61 precipitation 0.1 270 < th dose independent rect. 7 9
97 34.61 precipitation 0.1 270 < th dose dependent rect. 7 9
101 34.66 radiation 20.0 270 < th dose independent rect. 15 17
111 34.79 temperature 10.0 270 > th dose independent rect. 7 9
112 34.79 atmosphere 1015.0 270 < th dose independent rect. 7 9
113 34.79 temperature 10.0 270 > th dose independent rect. 16 15
114 34.79 radiation 40.0 270 < th dose independent rect. 16 15
121 34.92 atmosphere 995.0 270 > th dose independent rect. 16 15
130 34.99 radiation 1.0 270 > th dose independent rect. 7 9
151 35.08 temperature 10.0 90 > th dose dependent rect. 11 17
162 35.20 wind 9.0 270 < th dose independent rect. 16 15
163 35.20 temperature 10.0 10 > th dose dependent rect. 22 7
166 35.29 radiation 30.0 270 < th dose independent rect. 14 7
170 35.33 wind 9.0 270 < th dose independent rect. 21 18
172 35.35 temperature 30.0 270 < th dose independent rect. 2 8
177 35.42 radiation 40.0 270 < th dose dependent rect. 2 8
182 35.47 precipitation 0.1 270 < th dose independent rect. 10 16
183 35.47 precipitation 0.1 270 < th dose independent rect. 3 17
184 35.47 temperature 15.0 270 > th dose independent rect. 21 18
185 35.47 precipitation 0.1 270 < th dose dependent rect. 10 16
186 35.47 precipitation 0.1 270 < th dose dependent rect. 3 17
196 35.60 wind 9.0 270 < th dose independent rect. 3 17
197 35.61 wind 9.0 270 < th dose independent rect. 10 16
210 35.75 atmosphere 1015.0 270 < th dose independent rect. 20 7
215 35.79 temperature 10.0 270 > th dose independent rect. 15 6
219 35.82 atmosphere 995.0 270 > th dose independent rect. 15 6
220 35.82 radiation 40.0 270 < th dose independent rect. 13 9
246 35.89 precipitation 0.1 270 < th dose independent rect. 21 18
247 35.89 precipitation 0.1 270 < th dose dependent rect. 21 18
281 36.00 temperature 10.0 270 > th dose dependent rect. 7 8
283 36.01 wind 9.0 270 < th dose independent rect. 22 16
312 36.22 atmosphere 995.0 270 > th dose independent rect. 21 18
319 36.29 wind 1.0 270 > th dose independent rect. 15 6
330 36.38 radiation 40.0 270 < th dose dependent rect. 14 6
333 36.40 wind 9.0 270 < th dose independent rect. 15 6
334 36.40 precipitation 0.1 270 < th dose independent rect. 2 8
337 36.40 precipitation 0.1 270 < th dose dependent rect. 2 8
340 36.41 atmosphere 1015.0 270 < th dose independent rect. 21 18
363 36.55 temperature 15.0 270 > th dose independent rect. 22 16
365 36.56 temperature 10.0 270 > th dose independent rect. 2 8
366 36.56 atmosphere 995.0 270 > th dose independent rect. 2 8
367 36.56 atmosphere 1015.0 270 < th dose independent rect. 2 8
368 36.56 temperature 10.0 270 > th dose independent rect. 10 16
370 36.57 atmosphere 1015.0 270 < th dose independent rect. 15 6
371 36.57 temperature 10.0 270 > th dose independent rect. 14 8
373 36.57 atmosphere 995.0 270 > th dose independent rect. 22 16
376 36.60 wind 9.0 270 < th dose independent rect. 2 8
380 36.64 humidity 50.0 270 > th dose independent rect. 2 8
386 36.67 precipitation 0.1 270 < th dose independent rect. 16 15
387 36.67 precipitation 0.1 270 < th dose dependent rect. 16 15
392 36.74 atmosphere 995.0 270 > th dose independent rect. 7 9
403 36.81 precipitation 0.1 270 < th dose independent rect. 22 16
405 36.81 precipitation 0.1 270 < th dose dependent rect. 22 16
430 36.94 wind 1.0 270 > th dose independent rect. 3 17
436 36.97 humidity 50.0 270 > th dose independent rect. 16 15
439 36.99 atmosphere 1015.0 270 < th dose independent rect. 22 16
477 37.09 precipitation 0.1 270 < th dose independent rect. 15 6
478 37.09 humidity 50.0 270 > th dose independent rect. 21 18
485 37.09 precipitation 0.1 270 < th dose dependent rect. 15 6
489 37.10 wind 9.0 270 < th dose dependent rect. 21 5
526 37.22 humidity 50.0 90 > th dose dependent rect. 4 18
537 37.27 wind 9.0 270 < th dose dependent rect. 20 7
580 37.41 wind 9.0 270 < th dose independent rect. 14 8
596 37.43 temperature 15.0 10 > th dose independent rect. 22 7
604 37.46 wind 1.0 270 > th dose independent rect. 7 9
642 37.59 humidity 50.0 270 > th dose independent rect. 22 16
679 37.66 humidity 50.0 270 > th dose dependent rect. 20 7
698 37.75 atmosphere 995.0 10 > th dose independent rect. 5 17
699 37.75 humidity 50.0 270 > th dose dependent rect. 21 5
733 37.79 temperature 10.0 10 > th dose dependent rect. 9 20
754 37.85 radiation 1.0 10 < th dose dependent rect. 22 8
763 37.88 wind 1.0 270 > th dose independent rect. 21 6
783 37.94 humidity 50.0 10 > th dose dependent rect. 5 17
809 38.01 wind 9.0 10 < th dose independent rect. 22 7
811 38.01 temperature 30.0 10 < th dose independent rect. 22 7
812 38.01 humidity 50.0 10 > th dose independent rect. 22 7
815 38.01 atmosphere 995.0 10 > th dose independent rect. 22 7
816 38.01 radiation 1.0 10 < th dose independent rect. 22 7
822 38.01 temperature 10.0 10 > th dose independent rect. 5 17
824 38.01 atmosphere 1015.0 10 < th dose independent rect. 5 17
839 38.05 wind 1.0 270 > th dose independent rect. 2 19
842 38.05 radiation 1.0 10 < th dose dependent rect. 22 14
845 38.06 precipitation 0.1 270 < th dose independent rect. 23 2
848 38.06 precipitation 0.1 270 < th dose dependent rect. 23 2
854 38.07 atmosphere 1010.0 10 < th dose independent rect. 22 7
856 38.08 wind 7.0 270 < th dose independent rect. 23 2
871 38.10 temperature 30.0 270 < th dose independent rect. 23 2
872 38.10 humidity 50.0 270 > th dose independent rect. 23 2
875 38.10 atmosphere 995.0 270 > th dose independent rect. 23 2
876 38.10 radiation 1.0 270 < th dose independent rect. 23 2
881 38.10 temperature 10.0 270 > th dose independent rect. 1 22
882 38.10 radiation 1.0 270 < th dose dependent rect. 23 2
920 38.15 temperature 30.0 90 < th dose dependent rect. 4 18