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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0553500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.68 (0.0501) R2 : 0.137
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.21 (0.185) R2dE : 0.119 R2E : -0.0188
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.834 (0.116) R2dN8 : 0.156 R2N8 : 0.0182
σ : 0.914
deviance : 385.39
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.01
memory length : 15453
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
378.27 0.914 3.73 -0.945 0.403 1.61 0.0223 3.05 0.626 9.6 1.37 8693 -- --
383.71 0.912 3.73 -0.533 0.426 1.34 0.0695 -- 0.678 9.53 2.079 8741 -- --
377.76 0.905 3.73 -0.948 0.446 1.63 -- 3.19 0.613 9.66 1.372 8745 -- --
382.87 0.911 3.7 -0.53 0.413 1.26 -- -- 0.698 9.55 2.1 8718 -- --
378.72 0.906 3.76 -0.967 -- 1.57 -- 3.22 0.57 -- 1.46 11101 -- --
411.43 0.951 3.76 -0.574 0.368 -- -0.0717 -- 0.413 9.68 -- -- -- --
411.45 0.95 3.76 -0.576 0.369 -- -- -- 0.413 9.65 -- -- -- --
385.36 0.914 3.67 -0.502 -- 1.19 -- -- 0.727 -- 2.34 9710 -- --
387.13 0.916 3.7 -- 0.388 1.46 -- -- 0.812 9.85 1.864 8721 -- --
419.5 0.957 3.77 -0.58 -- -- -- -- 0.413 -- -- -- -- --
420.21 0.959 3.74 -- 0.37 -- -- -- 0.477 9.77 -- -- -- --
385.39 0.914 3.68 -- -- 1.21 -- -- 0.834 -- 2.01 15453 -- --
428.36 0.966 3.75 -- -- -- -- -- 0.478 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 372.47 radiation 10.0 14400 > th dose independent rect. 17 13
2 372.99 radiation 1.0 1440 < th dose independent rect. 22 9
5 373.10 radiation 1.0 1440 < th dose independent rect. 2 5
11 373.26 radiation 1.0 1440 < th dose independent rect. 5 2
13 373.48 radiation 1.0 1440 > th dose independent rect. 5 2
24 374.05 radiation 10.0 14400 > th dose independent rect. 17 1
36 374.12 radiation 1.0 1440 < th dose dependent rect. 22 9
37 374.16 radiation 1.0 1440 < th dose independent sin 10 NA
40 374.20 radiation 1.0 1440 < th dose dependent rect. 2 5
51 374.34 radiation 1.0 1440 < th dose independent rect. 17 14
57 374.49 radiation 1.0 1440 < th dose dependent rect. 5 1
63 374.82 radiation 1.0 1440 > th dose independent sin 10 NA
87 375.66 radiation 1.0 1440 < th dose dependent sin 10 NA
88 375.71 radiation 20.0 4320 > th dose independent rect. 16 16
89 375.71 radiation 1.0 1440 < th dose dependent rect. 17 14
90 375.82 radiation 1.0 1440 < th dose independent rect. 17 18
92 375.96 radiation 40.0 4320 < th dose dependent rect. 1 5
95 376.00 radiation 40.0 4320 < th dose dependent rect. 22 8
97 376.04 precipitation 0.1 43200 > th dose dependent rect. 17 15
104 376.19 radiation 1.0 1440 > th dose independent rect. 17 14
108 376.29 radiation 40.0 4320 < th dose dependent rect. 19 11
133 376.60 radiation 20.0 4320 < th dose dependent rect. 5 1
141 376.63 precipitation 0.1 43200 < th dose independent rect. 5 4
143 376.63 precipitation 0.1 43200 < th dose dependent rect. 5 4
160 376.82 radiation 1.0 1440 > th dose independent rect. 17 18
161 376.82 temperature 30.0 4320 < th dose dependent rect. 3 1
162 376.83 precipitation 0.1 43200 > th dose independent rect. 4 5
164 376.87 precipitation 0.1 43200 > th dose dependent rect. 4 5
165 376.88 temperature 10.0 4320 > th dose dependent rect. 3 1
167 376.89 precipitation 0.1 43200 < th dose independent rect. 7 2
168 376.89 precipitation 0.1 43200 < th dose dependent rect. 7 2
170 376.92 wind 9.0 14400 < th dose independent rect. 7 3
189 377.14 precipitation 0.1 43200 > th dose dependent rect. 3 15
191 377.16 humidity 90.0 43200 < th dose independent rect. 18 1
193 377.18 humidity 90.0 43200 > th dose dependent rect. 21 1
194 377.18 radiation 1.0 1440 < th dose dependent rect. 22 13
204 377.21 precipitation 0.1 43200 > th dose dependent rect. 3 18
211 377.24 temperature 10.0 4320 > th dose dependent rect. 2 7
213 377.26 temperature 30.0 4320 < th dose dependent rect. 2 7
223 377.31 radiation 1.0 1440 < th dose dependent rect. 2 9
229 377.34 humidity 50.0 14400 > th dose independent rect. 17 14
243 377.41 radiation 1.0 1440 > th dose independent rect. 5 6
252 377.44 radiation 1.0 1440 < th dose independent rect. 22 13
259 377.46 precipitation 0.1 43200 > th dose dependent rect. 19 14
299 377.57 radiation 1.0 1440 < th dose independent rect. 2 9
302 377.57 wind 5.0 43200 > th dose dependent rect. 5 2
304 377.58 wind 5.0 43200 > th dose independent rect. 5 1
305 377.58 radiation 1.0 1440 < th dose independent rect. 5 6
308 377.59 temperature 25.0 4320 > th dose independent rect. 6 3
316 377.61 radiation 1.0 14400 > th dose independent rect. 4 4
332 377.63 temperature 10.0 4320 > th dose dependent rect. 6 2
336 377.64 temperature 30.0 4320 < th dose dependent rect. 6 2
343 377.66 radiation 1.0 14400 < th dose independent rect. 22 10
348 377.67 temperature 25.0 4320 < th dose independent rect. 6 3
349 377.67 radiation 1.0 14400 < th dose independent rect. 2 6
354 377.67 precipitation 0.1 43200 > th dose dependent rect. 23 22
375 377.69 precipitation 0.1 43200 < th dose independent rect. 17 15
379 377.69 precipitation 0.1 43200 < th dose dependent rect. 17 15
385 377.71 precipitation 0.1 43200 > th dose independent rect. 17 15
393 377.71 humidity 50.0 14400 < th dose dependent rect. 17 16
451 377.85 radiation 1.0 4320 > th dose dependent rect. 5 1
453 377.86 humidity 50.0 14400 > th dose independent rect. 17 3
476 377.89 humidity 50.0 14400 > th dose independent rect. 17 7
492 377.92 humidity 90.0 43200 > th dose independent rect. 21 1
495 377.92 precipitation 0.1 43200 > th dose dependent rect. 3 9
501 377.93 precipitation 0.1 43200 > th dose dependent rect. 23 19
557 377.99 temperature 10.0 4320 > th dose dependent rect. 5 4
560 378.00 wind 5.0 43200 < th dose independent rect. 5 1
578 378.03 precipitation 0.1 43200 > th dose dependent sin 10 NA
598 378.05 wind 7.0 43200 > th dose independent rect. 20 17
599 378.05 wind 7.0 43200 < th dose independent rect. 20 17
600 378.05 temperature 30.0 4320 < th dose dependent rect. 5 4
686 378.15 temperature 10.0 4320 > th dose dependent sin 7 NA
704 378.16 wind 9.0 43200 > th dose dependent rect. 11 20
766 378.23 wind 9.0 43200 > th dose dependent rect. 21 1
790 378.27 precipitation 0.1 43200 < th dose independent rect. 17 4
791 378.27 precipitation 0.1 43200 < th dose dependent rect. 17 4
800 378.28 temperature 25.0 4320 > th dose dependent rect. 7 2
833 378.32 precipitation 0.1 43200 > th dose independent rect. 17 4
846 378.34 wind 5.0 43200 > th dose dependent rect. 4 8
863 378.36 wind 9.0 43200 > th dose dependent rect. 14 17
868 378.37 wind 5.0 43200 > th dose dependent rect. 3 10
870 378.37 wind 5.0 43200 > th dose dependent rect. 20 17
878 378.39 wind 9.0 43200 > th dose independent rect. 9 9
890 378.39 precipitation 0.1 43200 > th dose dependent rect. 19 23
907 378.43 precipitation 0.1 43200 < th dose independent rect. 19 14
911 378.43 humidity 50.0 14400 < th dose dependent rect. 17 1
929 378.43 precipitation 0.1 43200 < th dose dependent rect. 19 14
946 378.45 temperature 30.0 4320 < th dose dependent sin 8 NA
952 378.46 precipitation 0.1 43200 > th dose independent rect. 19 14
955 378.46 humidity 90.0 43200 > th dose dependent rect. 18 5
976 378.49 humidity 50.0 14400 < th dose independent rect. 17 16
995 378.51 wind 9.0 43200 > th dose dependent rect. 14 13