Os07g0553400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CSLF2 (Fragment).
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Os07g0553400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CSLF2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.95 | 0.332 | 2.97 | -0.015 | 0.106 | 0.0976 | -0.209 | -0.485 | 0.115 | 6.01 | 59 | 16 | -- | -- |
| 50.33 | 0.333 | 2.97 | -0.0208 | 0.116 | 0.0917 | -0.157 | -- | 0.115 | 6.17 | 62 | 9 | -- | -- |
| 50.05 | 0.33 | 2.97 | -0.0166 | 0.107 | 0.104 | -- | -0.466 | 0.116 | 6.01 | 58.76 | 16 | -- | -- |
| 50.36 | 0.333 | 2.97 | -0.0229 | 0.118 | 0.104 | -- | -- | 0.117 | 5.77 | 62.1 | 11 | -- | -- |
| 50.61 | 0.331 | 2.97 | -0.00967 | -- | 0.0733 | -- | -0.476 | 0.119 | -- | 56 | 15 | -- | -- |
| 50.64 | 0.334 | 2.97 | -0.0183 | 0.1 | -- | -0.216 | -- | 0.102 | 7.02 | -- | -- | -- | -- |
| 50.76 | 0.334 | 2.97 | -0.0227 | 0.1 | -- | -- | -- | 0.102 | 6.8 | -- | -- | -- | -- |
| 51.05 | 0.334 | 2.97 | -0.0196 | -- | 0.0742 | -- | -- | 0.115 | -- | 62.91 | 11 | -- | -- |
| 50.37 | 0.332 | 2.97 | -- | 0.118 | 0.104 | -- | -- | 0.119 | 5.78 | 63 | 11 | -- | -- |
| 51.29 | 0.335 | 2.98 | -0.0204 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 50.77 | 0.333 | 2.97 | -- | 0.0999 | -- | -- | -- | 0.105 | 6.81 | -- | -- | -- | -- |
| 51.06 | 0.334 | 2.97 | -- | -- | 0.0743 | -- | -- | 0.118 | -- | 62.91 | 11 | -- | -- |
| 51.3 | 0.334 | 2.97 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.29 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 2 | 46.30 | humidity | 70 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 41 | 46.43 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 4 |
| 43 | 46.45 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 3 |
| 63 | 46.47 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 165 | 46.50 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 168 | 46.50 | humidity | 60 | 30 | < th | dose dependent | rect. | 16 | 18 |
| 170 | 46.51 | humidity | 60 | 30 | < th | dose independent | rect. | 16 | 18 |
| 179 | 46.52 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 266 | 46.52 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 349 | 46.53 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 463 | 46.65 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 499 | 46.75 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 855 | 47.21 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 897 | 47.35 | wind | 1 | 10 | < th | dose independent | sin | 21 | NA |
| 922 | 47.46 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 934 | 47.48 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |