Os07g0553300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellulose synthase family protein.
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Os07g0553300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellulose synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.99 | 0.603 | 4.17 | -0.0182 | 0.443 | -0.736 | -1.47 | 0.57 | -0.0779 | 17.5 | 21.3 | 886 | -- | -- |
| 165.85 | 0.6 | 4.19 | -0.153 | 0.447 | -0.734 | -1.37 | -- | -0.12 | 17.3 | 21.4 | 904 | -- | -- |
| 170.15 | 0.608 | 4.17 | -0.0331 | 0.432 | -0.749 | -- | 0.468 | -0.0867 | 17.2 | 21.26 | 900 | -- | -- |
| 170.74 | 0.609 | 4.19 | -0.15 | 0.437 | -0.782 | -- | -- | -0.113 | 17.2 | 21.27 | 890 | -- | -- |
| 179.09 | 0.623 | 4.16 | 0.0249 | -- | -0.77 | -- | 0.623 | -0.0767 | -- | 21.3 | 1086 | -- | -- |
| 185.15 | 0.638 | 4.23 | -0.438 | 0.45 | -- | -1.44 | -- | -0.316 | 16.6 | -- | -- | -- | -- |
| 190.4 | 0.646 | 4.23 | -0.446 | 0.44 | -- | -- | -- | -0.323 | 16.1 | -- | -- | -- | -- |
| 180.15 | 0.625 | 4.18 | -0.137 | -- | -0.812 | -- | -- | -0.111 | -- | 21.22 | 1081 | -- | -- |
| 171.27 | 0.61 | 4.18 | -- | 0.44 | -0.815 | -- | -- | -0.0887 | 17.2 | 21.3 | 897 | -- | -- |
| 200.96 | 0.662 | 4.23 | -0.464 | -- | -- | -- | -- | -0.335 | -- | -- | -- | -- | -- |
| 195.64 | 0.654 | 4.22 | -- | 0.449 | -- | -- | -- | -0.273 | 16.1 | -- | -- | -- | -- |
| 180.58 | 0.626 | 4.17 | -- | -- | -0.853 | -- | -- | -0.0867 | -- | 21.28 | 1086 | -- | -- |
| 206.63 | 0.671 | 4.22 | -- | -- | -- | -- | -- | -0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.44 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 4 | 163.46 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 16 | 165.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 22 | 165.24 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 17 |
| 32 | 165.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 46 | 165.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 58 | 166.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 60 | 166.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 68 | 166.13 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 89 | 166.37 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 137 | 166.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 143 | 166.81 | wind | 3 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 148 | 166.82 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 162 | 166.91 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 165 | 166.93 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 16 |
| 205 | 167.12 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 20 |
| 235 | 167.27 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 240 | 167.28 | wind | 3 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 301 | 167.58 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 388 | 167.89 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 399 | 167.94 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 412 | 168.01 | wind | 7 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 449 | 168.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 457 | 168.14 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 22 |
| 480 | 168.20 | temperature | 30 | 30 | > th | dose dependent | rect. | 18 | 17 |
| 488 | 168.22 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 2 |
| 508 | 168.23 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 520 | 168.26 | temperature | 20 | 720 | < th | dose independent | rect. | 14 | 18 |
| 560 | 168.29 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 2 |
| 639 | 168.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 644 | 168.40 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 656 | 168.43 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 665 | 168.44 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 691 | 168.50 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 708 | 168.52 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 761 | 168.60 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 762 | 168.60 | wind | 7 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 788 | 168.65 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 809 | 168.67 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 835 | 168.72 | radiation | 40 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 840 | 168.74 | wind | 9 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 859 | 168.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 888 | 168.88 | radiation | 40 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 899 | 168.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 919 | 168.92 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 17 |