Os07g0553000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0553000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 627.57 | 1.18 | 6.9 | -3.26 | 0.0831 | 6.76 | -3.42 | 14.2 | -0.435 | 17.8 | 20.37 | 5202 | -- | -- |
| 711.53 | 1.25 | 6.62 | -3.94 | 0.111 | -1.43 | -3.41 | -- | -0.705 | 17.9 | 16.92 | 3166 | -- | -- |
| 655.04 | 1.19 | 6.9 | -3.26 | 0.217 | 6.33 | -- | 13.2 | -0.452 | 21 | 20.38 | 5053 | -- | -- |
| 732.01 | 1.26 | 6.63 | -3.94 | 0.072 | -2.21 | -- | -- | -0.723 | 16.8 | 12.2 | 4014 | -- | -- |
| 656.02 | 1.19 | 6.93 | -3.14 | -- | 7.49 | -- | 15.7 | -0.443 | -- | 20.1 | 5311 | -- | -- |
| 717.8 | 1.26 | 6.62 | -3.83 | 0.111 | -- | -3.4 | -- | -0.677 | 17.9 | -- | -- | -- | -- |
| 745.47 | 1.28 | 6.63 | -3.81 | 0.142 | -- | -- | -- | -0.691 | 21.2 | -- | -- | -- | -- |
| 732.26 | 1.26 | 6.63 | -3.94 | -- | -2.23 | -- | -- | -0.727 | -- | 12.2 | 4013 | -- | -- |
| 1127.73 | 1.56 | 6.53 | -- | 0.145 | -0.185 | -- | -- | -0.263 | 17.7 | 12.44 | 3248 | -- | -- |
| 746.64 | 1.28 | 6.62 | -3.81 | -- | -- | -- | -- | -0.692 | -- | -- | -- | -- | -- |
| 1127.58 | 1.57 | 6.53 | -- | 0.162 | -- | -- | -- | -0.267 | 19.3 | -- | -- | -- | -- |
| 1046.01 | 1.51 | 6.47 | -- | -- | 2.34 | -- | -- | -0.00199 | -- | 36.58 | 14 | -- | -- |
| 1128.98 | 1.57 | 6.53 | -- | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 586.53 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 4 | 599.14 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 1 | 4 |
| 10 | 600.54 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 16 | 601.72 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 21 | 602.99 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 25 | 603.74 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 46 | 607.15 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 47 | 607.36 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 49 | 607.53 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 55 | 608.40 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 63 | 608.96 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 75 | 608.97 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 11 |
| 77 | 609.70 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 85 | 610.86 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 87 | 611.02 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 117 | 613.27 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 119 | 613.31 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 139 | 613.57 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 142 | 613.68 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 143 | 613.74 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 144 | 613.83 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 164 | 614.02 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 174 | 614.28 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 176 | 614.34 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 179 | 614.49 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 198 | 614.71 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 244 | 615.58 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 15 | 6 |
| 257 | 615.68 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 271 | 615.68 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 289 | 616.02 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 291 | 616.04 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 293 | 616.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 302 | 616.35 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 320 | 616.45 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 335 | 616.65 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 383 | 617.00 | wind | 1.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 386 | 617.02 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 392 | 617.13 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 406 | 617.23 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 434 | 617.31 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 16 |
| 437 | 617.36 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 441 | 617.42 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 450 | 617.51 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 463 | 617.61 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 3 | 19 |
| 530 | 617.78 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 21 | 22 |
| 555 | 617.89 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 573 | 617.94 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 598 | 617.97 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 12 | 17 |
| 629 | 618.01 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 642 | 618.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 648 | 618.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 668 | 618.08 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 690 | 618.13 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 21 | 18 |
| 703 | 618.16 | atmosphere | 1010.0 | 14400 | > th | dose independent | no | NA | NA |
| 706 | 618.16 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 712 | 618.17 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 717 | 618.17 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 730 | 618.18 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 735 | 618.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 806 | 618.27 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 14 |
| 824 | 618.30 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 17 |
| 829 | 618.31 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 836 | 618.32 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 2 | 20 |
| 919 | 618.42 | radiation | 20.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 948 | 618.47 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 21 | NA |
| 949 | 618.47 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 1 |