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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0552800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cellulose synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.91 (0.0687) R2 : 0.588
β1 : -6.83 (0.274) R2dD : 0.754 R2D : 0.454
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.566 (0.265) R2dE : 0.00522 R2E : -0.00925
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.67 (1.12) R2dD*E : 0.0741 R2D*E : -0.163
γ1 : -1.03 (0.164) R2dN8 : 0.067 R2N8 : -0.0191
σ : 1.23
deviance : 700.59
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 93.13
memory length : 4698
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.33
open length of G : 2.83

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
695.62 1.24 4.88 -6.73 0.273 0.419 -2.61 7.52 -1.01 16.4 92.88 4194 2.34 3.2
760.46 1.29 4.96 -5.86 0.423 1.17 -2.18 -- -0.893 16.8 92.88 4194 2.34 3.2
696.03 1.23 4.93 -6.79 0.283 0.61 -- 8.41 -1.02 16.6 93.16 4695 2.28 2.84
772.5 1.3 4.97 -5.88 0.44 1.32 -- -- -0.895 17 92.88 4194 2.34 3.2
700.59 1.23 4.91 -6.83 -- 0.566 -- 8.67 -1.03 -- 93.13 4698 2.33 2.83
776.2 1.31 4.97 -5.81 0.19 -- -2.54 -- -0.963 16.8 -- -- -- --
792.79 1.32 4.98 -5.82 0.182 -- -- -- -0.976 17.8 -- -- -- --
774.2 1.3 4.89 -5.97 -- 1 -- -- -0.737 -- 79.65 6996 1.79 1.72
1118.82 1.56 4.83 -- 0.0296 3.34 -- -- 0.323 15.7 95 47520 2.04 5.05
794.5 1.32 4.98 -5.83 -- -- -- -- -0.98 -- -- -- -- --
1685.87 1.92 4.83 -- 0.282 -- -- -- -0.328 16.8 -- -- -- --
1003.4 1.48 4.65 -- -- 4.5 -- -- 0.516 -- 95 47520 1.8 2.52
1690.07 1.92 4.83 -- -- -- -- -- -0.334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 683.97 humidity 90 14400 < th dose independent rect. 2 4
5 690.35 humidity 90 14400 > th dose independent rect. 1 6
7 691.19 humidity 90 14400 > th dose independent rect. 4 2
11 694.79 humidity 80 14400 > th dose dependent rect. 1 5
24 700.89 humidity 80 14400 > th dose dependent rect. 1 1
36 702.31 humidity 90 14400 > th dose independent rect. 1 2
65 706.37 humidity 90 14400 < th dose independent rect. 1 2
88 709.71 wind 5 43200 > th dose dependent rect. 18 2
92 710.41 wind 1 43200 < th dose dependent rect. 2 1
125 713.34 wind 5 43200 > th dose independent rect. 18 2
127 713.41 wind 1 14400 < th dose independent rect. 1 2
139 714.60 wind 5 43200 < th dose independent rect. 18 2
168 717.79 humidity 80 43200 > th dose dependent rect. 8 1
169 717.85 humidity 90 43200 < th dose independent rect. 3 7
178 718.23 wind 1 14400 > th dose independent rect. 1 2
191 718.79 humidity 80 43200 > th dose independent rect. 9 1
200 719.20 humidity 80 43200 > th dose dependent rect. 5 5
233 721.16 atmosphere 1015 720 < th dose independent rect. 24 9
242 721.53 wind 9 43200 > th dose dependent rect. 20 1
243 721.57 wind 3 43200 > th dose dependent rect. 14 15
249 721.85 radiation 30 43200 > th dose independent rect. 15 2
292 722.51 radiation 10 43200 > th dose independent rect. 17 1
307 722.63 wind 1 43200 < th dose dependent rect. 9 4
309 722.73 wind 9 720 > th dose dependent rect. 21 13
311 722.78 humidity 80 43200 > th dose independent rect. 8 3
312 722.80 wind 9 43200 < th dose dependent rect. 13 14
313 722.82 wind 7 43200 < th dose independent rect. 15 12
315 722.83 wind 7 43200 < th dose independent rect. 15 5
326 723.00 humidity 80 43200 < th dose independent rect. 9 2
334 723.11 wind 9 720 > th dose dependent rect. 19 15
335 723.14 wind 7 43200 > th dose independent rect. 15 5
349 723.35 wind 7 43200 > th dose independent rect. 15 12
352 723.37 wind 7 43200 < th dose independent rect. 15 10
355 723.38 atmosphere 1015 720 < th dose independent rect. 24 17
359 723.41 temperature 20 270 < th dose dependent rect. 22 19
360 723.42 temperature 15 720 > th dose independent rect. 5 7
361 723.43 wind 3 43200 > th dose dependent rect. 15 9
365 723.50 wind 5 43200 < th dose independent rect. 14 15
366 723.50 temperature 20 10 < th dose dependent sin 3 NA
394 723.74 wind 9 43200 < th dose dependent rect. 18 3
400 723.81 wind 1 43200 > th dose dependent sin 17 NA
412 723.93 humidity 90 720 > th dose dependent rect. 3 12
415 723.99 wind 7 43200 > th dose independent rect. 15 10
417 724.02 temperature 30 43200 > th dose dependent rect. 10 2
419 724.03 temperature 20 10 < th dose dependent rect. 5 7
423 724.06 temperature 30 43200 < th dose independent rect. 10 1
433 724.12 temperature 30 43200 > th dose independent rect. 10 1
460 724.18 wind 9 43200 < th dose dependent sin 17 NA
464 724.21 wind 9 720 > th dose independent rect. 1 9
472 724.24 temperature 30 43200 < th dose independent rect. 5 6
473 724.24 temperature 30 43200 < th dose independent rect. 24 11
474 724.24 temperature 30 43200 < th dose independent rect. 21 14
485 724.26 wind 7 270 > th dose independent rect. 1 7
514 724.30 temperature 20 10 < th dose dependent sin 22 NA
544 724.38 temperature 20 10 < th dose dependent rect. 5 13
564 724.41 wind 1 43200 > th dose dependent rect. 10 9
580 724.47 wind 9 43200 < th dose dependent rect. 10 9
581 724.47 temperature 20 10 < th dose dependent rect. 4 16
606 724.59 wind 5 43200 > th dose independent rect. 14 15
608 724.61 atmosphere 1015 720 < th dose independent rect. 21 15
610 724.62 wind 9 43200 < th dose dependent rect. 12 4
612 724.62 wind 5 43200 < th dose dependent rect. 10 6
621 724.64 temperature 20 10 < th dose dependent rect. 5 11
648 724.68 wind 1 43200 > th dose dependent rect. 12 4
693 724.82 temperature 20 270 < th dose dependent sin 6 NA
724 724.89 wind 7 43200 < th dose independent rect. 15 17
732 724.92 temperature 20 720 < th dose dependent rect. 8 2
734 724.93 humidity 80 14400 > th dose independent rect. 23 1
759 724.99 wind 9 43200 > th dose dependent rect. 13 1
760 725.00 wind 7 43200 < th dose independent rect. 15 2
772 725.06 temperature 25 43200 > th dose dependent rect. 6 1
788 725.12 wind 3 43200 > th dose independent rect. 10 5
804 725.19 temperature 20 720 < th dose dependent rect. 8 5
805 725.19 wind 9 43200 < th dose dependent rect. 15 7
807 725.20 wind 7 43200 > th dose independent rect. 15 17
821 725.25 wind 1 43200 < th dose independent rect. 8 4
840 725.31 wind 1 43200 > th dose dependent rect. 13 1
858 725.34 temperature 25 43200 > th dose independent rect. 3 1
930 725.59 wind 9 43200 < th dose dependent rect. 13 1
950 725.66 temperature 20 270 < th dose dependent rect. 8 9
953 725.67 temperature 30 43200 > th dose independent sin 9 NA
955 725.67 temperature 25 43200 < th dose independent rect. 3 1
974 725.70 temperature 30 43200 < th dose independent sin 9 NA
987 725.76 temperature 30 43200 > th dose dependent sin 9 NA