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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0551500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cellulose synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0338) R2 : 0.412
β1 : -0.897 (0.124) R2dD : 0.0744 R2D : 0.0821
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.95 (0.126) R2dE : 0.318 R2E : 0.327
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.113 (0.0725) R2dN8 : 0.00446 R2N8 : 0.0165
σ : 0.632
deviance : 184.03
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_____
C
peak time of C : --
E
wheather : radiation
threshold : -0.6926
memory length : 115
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 10.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.84 0.605 3.49 -0.957 0.716 1.6 -0.79 -3.07 0.112 15.3 10 84 7.57 --
170.47 0.608 3.48 -0.877 0.71 1.6 -1.38 -- 0.151 15.2 9.42 77 7.54 --
167.14 0.602 3.51 -1.02 0.703 1.58 -- -3.49 0.11 15.5 8.898 78 7.73 --
176.34 0.618 3.49 -0.904 0.706 1.62 -- -- 0.137 15.5 9.273 76 7.59 --
177.14 0.62 3.51 -1.03 -- 2.11 -- -3.45 0.0808 -- 0.005575 87 8.82 --
202.3 0.667 3.46 -0.822 1.15 -- -1.39 -- 0.28 15.3 -- -- -- --
208.4 0.676 3.46 -0.848 1.15 -- -- -- 0.272 15.4 -- -- -- --
184.03 0.632 3.5 -0.897 -- 1.95 -- -- 0.113 -- -0.6926 115 10.2 --
197.54 0.655 3.47 -- 0.719 1.53 -- -- 0.237 15.4 7.011 73 7.81 --
282.15 0.785 3.46 -0.897 -- -- -- -- 0.242 -- -- -- -- --
227.36 0.705 3.44 -- 1.16 -- -- -- 0.367 15.4 -- -- -- --
206.29 0.669 3.47 -- -- 1.92 -- -- 0.227 -- -0.5518 115 10.3 --
303.36 0.813 3.44 -- -- -- -- -- 0.342 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.04 temperature 10.0 90 > th dose dependent rect. 17 19
2 154.15 atmosphere 1005.0 90 > th dose independent rect. 12 6
4 154.74 wind 7.0 90 < th dose independent rect. 17 19
7 155.83 wind 7.0 270 < th dose independent rect. 15 21
10 157.03 atmosphere 995.0 270 > th dose dependent rect. 12 3
12 157.14 humidity 50.0 270 > th dose independent rect. 11 5
16 157.58 humidity 50.0 270 > th dose independent rect. 12 3
19 158.05 atmosphere 995.0 270 > th dose dependent rect. 11 5
23 158.30 temperature 10.0 270 > th dose dependent rect. 15 21
34 159.35 humidity 90.0 270 < th dose independent rect. 12 3
37 159.61 wind 1.0 90 > th dose dependent rect. 12 5
47 160.08 atmosphere 1005.0 270 > th dose independent rect. 12 2
52 160.21 atmosphere 1010.0 270 < th dose independent rect. 12 3
54 160.25 temperature 15.0 90 > th dose independent rect. 17 19
55 160.29 temperature 10.0 270 > th dose independent rect. 12 3
58 160.29 temperature 10.0 270 > th dose independent rect. 15 21
62 160.43 radiation 1.0 270 > th dose independent rect. 12 3
63 160.55 wind 7.0 270 < th dose independent rect. 2 10
65 160.64 atmosphere 995.0 270 > th dose independent rect. 12 3
66 160.64 precipitation 0.1 270 < th dose independent rect. 15 21
67 160.64 precipitation 0.1 270 < th dose dependent rect. 15 21
70 160.77 precipitation 0.1 270 < th dose independent rect. 12 3
71 160.77 precipitation 0.1 270 < th dose dependent rect. 12 3
72 160.80 atmosphere 995.0 10 > th dose dependent rect. 12 6
73 160.84 wind 9.0 270 < th dose independent rect. 12 3
84 161.31 wind 3.0 90 > th dose independent rect. 12 5
86 161.43 atmosphere 995.0 90 > th dose independent rect. 17 19
87 161.44 humidity 90.0 90 < th dose independent rect. 12 5
88 161.49 temperature 15.0 270 > th dose independent rect. 2 10
91 161.58 temperature 10.0 90 > th dose dependent rect. 4 8
99 161.79 humidity 50.0 270 > th dose independent rect. 12 15
105 162.00 temperature 10.0 270 > th dose dependent rect. 2 9
124 162.29 radiation 40.0 270 < th dose independent rect. 16 19
145 162.76 humidity 50.0 10 > th dose independent rect. 17 19
146 162.76 atmosphere 995.0 270 > th dose independent rect. 15 21
150 162.86 wind 9.0 90 < th dose independent rect. 12 5
169 163.30 wind 1.0 270 > th dose independent rect. 12 3
190 163.71 humidity 60.0 10 > th dose independent rect. 12 6
207 164.00 wind 9.0 90 < th dose dependent rect. 17 19
215 164.13 temperature 25.0 90 > th dose independent rect. 17 19
217 164.26 radiation 1.0 270 > th dose dependent rect. 12 2
233 164.43 wind 1.0 270 > th dose dependent rect. 12 3
238 164.45 humidity 50.0 270 > th dose independent rect. 22 18
241 164.49 temperature 30.0 30 < th dose independent rect. 12 5
286 165.27 precipitation 0.1 270 < th dose independent rect. 2 10
287 165.27 precipitation 0.1 270 < th dose dependent rect. 2 10
289 165.29 atmosphere 1015.0 90 < th dose independent rect. 17 19
290 165.29 radiation 1.0 90 > th dose dependent rect. 12 5
311 165.67 atmosphere 995.0 270 > th dose independent rect. 2 10
312 165.67 atmosphere 1015.0 270 < th dose independent rect. 2 10
313 165.67 temperature 10.0 270 > th dose independent rect. 12 14
336 165.93 radiation 40.0 270 > th dose dependent rect. 12 1
364 166.22 radiation 40.0 270 > th dose independent rect. 12 1
393 166.25 temperature 10.0 1440 > th dose independent rect. 13 5
400 166.25 temperature 10.0 1440 > th dose independent rect. 18 19
414 166.42 humidity 50.0 270 > th dose independent rect. 2 10
415 166.42 radiation 10.0 90 > th dose dependent sin 14 NA
416 166.42 temperature 10.0 270 > th dose dependent rect. 12 3
420 166.55 temperature 10.0 90 > th dose dependent rect. 12 5
439 166.61 radiation 40.0 90 < th dose dependent sin 15 NA
523 167.22 temperature 30.0 270 < th dose independent rect. 12 3
549 167.37 wind 7.0 270 < th dose independent rect. 16 5
569 167.52 wind 7.0 270 < th dose independent rect. 15 7
595 167.75 atmosphere 1015.0 270 < th dose independent rect. 15 21
604 167.78 temperature 10.0 270 > th dose dependent rect. 16 6
613 167.88 precipitation 0.1 270 < th dose independent rect. 12 14
614 167.88 precipitation 0.1 270 < th dose dependent rect. 12 14
638 168.17 wind 1.0 270 > th dose independent rect. 16 6
639 168.18 radiation 20.0 90 < th dose independent sin 14 NA
643 168.21 precipitation 0.1 270 < th dose independent rect. 16 6
644 168.21 radiation 30.0 270 < th dose independent rect. 15 7
645 168.21 precipitation 0.1 270 < th dose dependent rect. 16 6
652 168.27 temperature 10.0 270 > th dose independent rect. 16 6
654 168.27 temperature 10.0 270 > th dose independent rect. 22 18
678 168.42 atmosphere 995.0 270 > th dose independent rect. 16 5
709 168.64 wind 9.0 270 < th dose independent rect. 12 14
712 168.67 atmosphere 1015.0 270 < th dose independent rect. 16 5
772 169.04 atmosphere 995.0 270 > th dose independent rect. 22 17
806 169.26 precipitation 0.1 270 < th dose independent rect. 22 18
808 169.26 precipitation 0.1 270 < th dose dependent rect. 22 18
824 169.40 radiation 1.0 270 > th dose independent rect. 16 20
844 169.48 wind 9.0 270 < th dose dependent rect. 12 3
846 169.50 radiation 40.0 270 > th dose independent rect. 12 21
866 169.61 wind 9.0 270 < th dose dependent rect. 16 5
889 169.70 radiation 10.0 90 > th dose dependent rect. 12 21
975 170.15 radiation 40.0 270 > th dose dependent rect. 12 21