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Os07g0550600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.54 (0.0661) R2 : 0.247
β1 : 1.02 (0.241) R2dD : 0.0315 R2D : 0.0114
β2 : 0.849 (0.155) R2dC : 0.0515 R2C : 0.0489
β3 : 2.58 (0.272) R2dE : 0.165 R2E : 0.121
β4 : 3 (0.592) R2dD*C : 0.0448 R2D*C : 0.0216
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.39 (0.146) R2dN8 : 0.0151 R2N8 : -0.0222
σ : 1.22
deviance : 687.82
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C
peak time of C : 23.6
E
wheather : radiation
threshold : 6.241
memory length : 1390
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.8
open length of G : 9.55

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
680 1.23 6.52 1.16 0.84 2.65 3.06 -2.51 0.456 23.8 8.771 1407 8.92 9.2
687.82 1.22 6.54 1.02 0.849 2.58 3 -- 0.39 23.6 6.241 1390 8.8 9.55
719.59 1.25 6.5 1.08 0.847 2.57 -- -2.45 0.428 0.17 8.565 1408 8.92 9.27
725.49 1.25 6.51 1.09 0.937 2.57 -- -- 0.41 0.658 5.327 1403 8.79 9.4
720.56 1.25 6.56 1.13 -- 3.25 -- -1.43 0.324 -- 9.631 1085 8.9 9.01
822.49 1.34 6.63 0.796 0.891 -- 2.52 -- -0.0455 23.9 -- -- -- --
848.07 1.36 6.63 0.689 0.902 -- -- -- -0.0612 0.727 -- -- -- --
718.72 1.25 6.55 0.866 -- 3.14 -- -- 0.252 -- 8.982 1069 8.87 9.32
741.62 1.27 6.56 -- 0.882 2.54 -- -- 0.247 0.401 8.883 1392 8.84 9.6
899 1.4 6.62 0.721 -- -- -- -- -0.045 -- -- -- -- --
860.58 1.37 6.65 -- 0.913 -- -- -- -0.138 0.762 -- -- -- --
736.5 1.26 6.57 -- -- 3.15 -- -- 0.155 -- 10 1064 9.05 9.23
912.73 1.41 6.63 -- -- -- -- -- -0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 684.56 radiation 10 1440 < th dose dependent rect. 9 9
2 687.31 radiation 10 1440 < th dose dependent rect. 9 11
3 687.33 radiation 10 1440 < th dose dependent rect. 9 13
6 687.37 radiation 10 1440 < th dose dependent rect. 9 18
14 690.20 radiation 10 1440 > th dose independent rect. 8 23
15 690.43 radiation 10 1440 > th dose independent rect. 11 20
21 691.19 wind 7 4320 < th dose independent rect. 17 1
28 691.83 radiation 20 1440 < th dose dependent rect. 11 7
30 692.53 radiation 10 1440 > th dose independent rect. 8 10
45 692.97 radiation 20 1440 < th dose dependent rect. 11 11
47 692.99 radiation 10 1440 < th dose dependent sin 19 NA
49 693.03 radiation 20 1440 < th dose dependent rect. 11 16
61 694.57 radiation 10 1440 > th dose independent sin 20 NA
76 695.47 radiation 10 1440 > th dose independent rect. 11 23
80 695.65 wind 7 4320 > th dose independent rect. 17 1
81 695.71 radiation 10 1440 > th dose independent rect. 15 23
83 695.83 radiation 10 1440 > th dose independent rect. 11 7
162 698.52 radiation 10 1440 > th dose independent rect. 6 12
176 698.57 radiation 10 1440 > th dose independent no NA NA
258 699.12 wind 7 43200 > th dose dependent rect. 19 1
304 700.06 wind 5 4320 > th dose dependent rect. 17 2
309 700.50 radiation 10 1440 < th dose dependent rect. 16 2
323 701.11 radiation 1 1440 < th dose independent rect. 9 2
324 701.11 radiation 1 1440 < th dose dependent rect. 9 2
330 701.15 wind 7 1440 > th dose independent rect. 14 4
338 701.34 wind 7 4320 < th dose independent rect. 15 4
384 702.99 radiation 40 1440 < th dose dependent rect. 15 3
425 704.24 radiation 40 1440 < th dose dependent rect. 15 7
427 704.26 radiation 40 1440 < th dose dependent rect. 15 5
442 704.57 radiation 40 1440 < th dose dependent rect. 15 12
444 704.69 radiation 1 1440 < th dose independent rect. 11 19
448 704.79 radiation 10 1440 > th dose independent rect. 15 2
499 705.51 radiation 1 1440 > th dose dependent rect. 15 3
563 706.99 humidity 50 1440 > th dose dependent rect. 12 1
580 707.45 humidity 90 1440 < th dose dependent rect. 12 1
612 707.96 wind 9 43200 > th dose independent rect. 14 6
615 708.00 wind 9 43200 > th dose independent rect. 14 8
629 708.65 radiation 10 1440 > th dose independent rect. 8 6
643 708.72 wind 9 43200 < th dose independent rect. 14 6
646 708.84 radiation 1 1440 < th dose independent rect. 11 11
648 708.88 radiation 1 1440 < th dose independent rect. 11 16
649 708.89 radiation 1 1440 < th dose independent rect. 11 9
654 708.94 radiation 1 1440 < th dose independent rect. 11 13
656 708.98 wind 7 43200 > th dose independent rect. 13 1
663 709.06 wind 9 43200 < th dose independent rect. 14 8
684 709.33 wind 7 1440 > th dose dependent rect. 15 1
719 709.83 wind 9 43200 < th dose independent rect. 14 3
763 710.16 humidity 80 1440 < th dose independent rect. 7 8
926 710.91 radiation 20 1440 < th dose dependent rect. 11 1
939 711.26 wind 7 43200 < th dose independent rect. 13 1
958 711.54 wind 9 43200 < th dose independent rect. 11 11