Os07g0550500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os07g0550500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.46 | 0.628 | 3.71 | -0.206 | 0.876 | 0.989 | 0.385 | -1.96 | 0.378 | 22.1 | 26.3 | 864 | -- | -- |
| 182.01 | 0.628 | 3.65 | 0.244 | 0.849 | 0.972 | 0.029 | -- | 0.504 | 22 | 26.3 | 865 | -- | -- |
| 178.29 | 0.622 | 3.72 | -0.179 | 0.916 | 1 | -- | -2.03 | 0.421 | 22 | 26.5 | 899 | -- | -- |
| 181.18 | 0.627 | 3.65 | 0.238 | 1.07 | 0.814 | -- | -- | 0.533 | 21.9 | 25.9 | 2274 | -- | -- |
| 212.06 | 0.678 | 3.7 | -0.305 | -- | 1.46 | -- | -1.79 | 0.264 | -- | 26.3 | 776 | -- | -- |
| 201.99 | 0.666 | 3.6 | 0.547 | 1.25 | -- | 0.177 | -- | 0.779 | 21.9 | -- | -- | -- | -- |
| 202.11 | 0.666 | 3.6 | 0.541 | 1.25 | -- | -- | -- | 0.778 | 21.9 | -- | -- | -- | -- |
| 216.89 | 0.686 | 3.65 | 0.136 | -- | 1.36 | -- | -- | 0.392 | -- | 26.01 | 754 | -- | -- |
| 182.59 | 0.629 | 3.66 | -- | 1.08 | 0.872 | -- | -- | 0.507 | 21.8 | 26 | 2311 | -- | -- |
| 295.84 | 0.804 | 3.57 | 0.555 | -- | -- | -- | -- | 0.778 | -- | -- | -- | -- | -- |
| 209.82 | 0.678 | 3.61 | -- | 1.25 | -- | -- | -- | 0.718 | 21.9 | -- | -- | -- | -- |
| 217.28 | 0.687 | 3.66 | -- | -- | 1.39 | -- | -- | 0.382 | -- | 26.26 | 769 | -- | -- |
| 303.96 | 0.814 | 3.58 | -- | -- | -- | -- | -- | 0.717 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.36 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 12 |
| 4 | 169.95 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 12 |
| 12 | 170.59 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 9 |
| 21 | 171.57 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 22 | 171.60 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 7 |
| 23 | 171.63 | temperature | 25 | 270 | < th | dose independent | sin | 15 | NA |
| 24 | 171.68 | temperature | 25 | 270 | > th | dose independent | sin | 15 | NA |
| 42 | 173.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 47 | 173.15 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 64 | 173.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 18 | 9 |
| 67 | 173.93 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 75 | 174.10 | temperature | 25 | 90 | < th | dose dependent | sin | 14 | NA |
| 79 | 174.22 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 11 |
| 84 | 174.33 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 183 | 175.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 187 | 175.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 199 | 175.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 315 | 176.75 | temperature | 20 | 90 | > th | dose dependent | sin | 13 | NA |
| 339 | 176.91 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 1 |
| 364 | 177.12 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 504 | 178.27 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 8 |
| 542 | 178.50 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 1 |
| 566 | 178.65 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 5 |
| 623 | 178.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 702 | 179.37 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 721 | 179.44 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 19 |
| 722 | 179.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 740 | 179.54 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 752 | 179.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 766 | 179.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 767 | 179.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 770 | 179.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 776 | 179.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 796 | 179.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 798 | 179.70 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 800 | 179.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 837 | 179.83 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 1 |
| 840 | 179.84 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 849 | 179.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 870 | 179.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 876 | 179.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 918 | 180.13 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 9 |
| 941 | 180.24 | radiation | 10 | 720 | > th | dose independent | rect. | 16 | 1 |
| 943 | 180.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 16 |
| 944 | 180.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 957 | 180.30 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 960 | 180.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 985 | 180.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 11 |
| 991 | 180.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 999 | 180.32 | radiation | 1 | 43200 | < th | dose dependent | sin | 16 | NA |